Turn on genotype consolidation when using hap mode

ACEnglish · Mar 23, 2022 · 4dd9968 · 4dd9968
1 parent c2c1ef4
commit 4dd9968
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/truvari/collapse.py b/truvari/collapse.py
@@ -75,7 +75,7 @@ def collapse_chunk(chunk):
 
     for key, val in ret.items():
         logging.debug("Collapsing %s", key)
-        val[0] = collapse_into_entry(val[0], val[1])
+        val[0] = collapse_into_entry(val[0], val[1], matcher.hap)
 
     ret = list(ret.values())
     for i in chunk_dict['__filtered']: