Skip LiveQA and MedicationQA annotators if generated output is empty … #1
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| # This GitHub Actions workflow automatically updates the pinned versions | |
| # in requirements.txt for all Python dependencies (including transitive dependencies) | |
| # whenever setup.cfg is modified. | |
| name: Update requirements.txt | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| paths: | |
| - "setup.cfg" | |
| - '.github/workflows/update-requirements.yml' | |
| jobs: | |
| update-requirements: | |
| name: Update requirements.txt | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8"] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Upgrade pip | |
| run: pip install --upgrade pip | |
| - name: Install PyTorch manually | |
| # PyTorch has to be installed manually in a separate step with --no-cache-dir | |
| # to avoid pip getting killed because PyTorch is too big | |
| # See: https://stackoverflow.com/a/54329850 | |
| run: pip install torch==2.1.2 torchvision==0.16.2 --index-url https://download.pytorch.org/whl/cu121 --no-cache-dir | |
| - name: Upgrade dependencies for Dependabot alerts | |
| run: pip install -e .[all,dev] urllib3==1.26.18 requests==2.31.0 Jinja2==3.1.3 certifi==2024.2.2 aiohttp==3.9.3 | |
| - name: Verify dependencies | |
| run: pip check | |
| - name: Write header to requirements.txt | |
| run: echo '# This file is automatically generated by GitHub Actions and contains pinned versions for all transitive Python dependencies. Do not modify this file!' > requirements.txt | |
| - name: Write dependencies to requirements.txt | |
| # grep is used to exclude dependencies installed in editable mode | |
| # and dependencies installed from outside PyPI. | |
| # sed is used to loosen the version matches for PyTorch | |
| # so that any CUDA version matches. | |
| run: pip freeze | grep -v -E "( @ |^-e)" | sed -E 's/==([A-Za-z0-9.]+)\+[A-Za-z0-9.]+/~=\1/' >> requirements.txt | |
| # Need to manually run tests here because the pull request opened later will not | |
| # run the test workflow. | |
| # | |
| # From https://docs.github.com/en/actions/security-guides/automatic-token-authentication#using-the-github_token-in-a-workflow | |
| # | |
| # ...events triggered by the GITHUB_TOKEN... will not create a new workflow run. | |
| # This prevents you from accidentally creating recursive workflow runs. For example, | |
| # if a workflow run pushes code using the repository's GITHUB_TOKEN, a new workflow | |
| # will not run even when the repository contains a workflow configured to run when | |
| # push events occur. | |
| - name: Run linter | |
| run: ./pre-commit.sh | |
| - name: Run tests | |
| run: pytest | |
| - name: Run helm-run | |
| run: helm-run --suite test --run-entries simple1:model=simple/model1 --max-eval-instances 10 --exit-on-error | |
| - name: Create pull request | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| commit-message: Update requirements.txt | |
| title: "Update requirements.txt" | |
| branch: actions/update-requirements | |
| delete-branch: true | |
| body: Auto-generated from GitHub Actions. |