txrm2nexus
This project allows to process in many ways images in hdf5 format. Moreover it allows to convert from xrm/txrm formats into hdf5 format. It has been developed at ALBA Synchrotron Light Source, and it is mainly used for image processing purposes at BL09-Mistral Tomography and Spectroscopy Beamline.
Some of the applications present on the package, allow the conversion from xrm to hdf5 files:
- hdf2h5
- xrm2nexus
- txrm2nexus
- mosaic2nexus
- normalize
- autotxrm2nexus
- automosaic2nexus
- autonormalize
txrm2nexus is a file format converter which converts 'txrm' tomography projections (output of the TXM microscope at mistral), to NeXus standard files compliant with the NXtomo nexus definition.
mosaic2nexus application converts the .xrm mosaics into hdf5.
normalize script can be used to normalize tomography projections, spectroscopy images, and mosaic images. The normalization is done using FF images, accelerator currents, and exposure times.
Three scripts called autotxrm2nexus, automosaic2nexus and autonormalize, allow to automate the procedures of conversion for many files.
This software is used at BL09 of the ALBA-CELLS Synchrotron.
txrm2nexus is distributed under the terms of the GNU General Public License (or GPL).