Merge pull request #1531 from ANTsX/antsAIMI

DOC: Recommend Mattes MI as the default metric
ANTsX · May 1, 2023 · 7b33cc6 · 7b33cc6
2 parents 1c5c422 + edf71eb
commit 7b33cc6
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/Examples/antsAI.cxx b/Examples/antsAI.cxx
@@ -1595,19 +1595,20 @@ InitializeCommandLineOptions(itk::ants::CommandLineParser * parser)
  {
  std::string description =
  std::string("These image metrics are available: ") +
- std::string("MI: joint histogram and Mattes: mutual information  and GC: global correlation.");
+ std::string("Mattes: Mattes mutual information (recommended), GC: global correlation, MI: joint histogram mutual information");
 
  OptionType::Pointer option = OptionType::New();
  option->SetLongName("metric");
  option->SetShortName('m');
- option->SetUsageOption(0,
- "MI[fixedImage,movingImage,<numberOfBins=32>,<samplingStrategy={None,Regular,Random}>,<"
- "samplingPercentage=[0,1]>]");
  option->SetUsageOption(1,
  "Mattes[fixedImage,movingImage,<numberOfBins=32>,<samplingStrategy={None,Regular,Random}>,<"
  "samplingPercentage=[0,1]>]");
  option->SetUsageOption(
  2, "GC[fixedImage,movingImage,<radius=NA>,<samplingStrategy={None,Regular,Random}>,<samplingPercentage=[0,1]>]");
+ option->SetUsageOption(3,
+ "MI[fixedImage,movingImage,<numberOfBins=32>,<samplingStrategy={None,Regular,Random}>,<"
+ "samplingPercentage=[0,1]>]");
+
  option->SetDescription(description);
  parser->AddOption(option);
  }