Installation error: /usr/lib64/libOpenGL.so: undefined reference to `_glapi_tls_Current'

[anshuhim20]

Dear All,
I have used the following link for installation of ANTs on my RHEL Red Hat Enterprise Linux Workstation release 7.9 using https://sourceforge.net/p/advants/discussion/840261/thread/53dffda1/#619a/f05e. I have NVIDIA graphics card installed and the output of $ rpm -qa *\nvidia* is :
nvidia-kmod-387.26-2.el7.x86_64
xorg-x11-drv-nvidia-libs-387.26-1.el7.x86_64
xorg-x11-drv-nvidia-devel-387.26-1.el7.x86_64
xorg-x11-drv-nvidia-387.26-1.el7.x86_64
xorg-x11-drv-nvidia-gl-387.26-1.el7.x86_64

I am also attaching the build log as well
build.log

I have also tried putting cmake -DWITH_OPENGL=OFF -S /home/USER/ANTs -B /home/USER/build/VTK in my build directory as suggested here https://askubuntu.com/questions/1197026/libgl-so-undefined-reference-to-glapi-tls-current it executes though with the below message
Not using CCache
-- SuperBuild - ANTS => Requires ITKv5,
-- SuperBuild - ITKv5[OK]
-- SuperBuild - ANTS[OK]
-- Configuring done
-- Generating done
-- Build files have been written to: /home/DST-CSRI/build/VTK

And after compiling as per the above mentioned link ccmake ~/ANTs
the error is given below
[ 56%] Linking CXX executable ../../bin/vtkProbeOpenGLVersion-9.1
/usr/lib64/libOpenGL.so: undefined reference to `_glapi_tls_Current'
collect2: error: ld returned 1 exit status
make[5]: *** [bin/vtkProbeOpenGLVersion-9.1] Error 1
make[4]: *** [Rendering/OpenGL2/CMakeFiles/vtkProbeOpenGLVersion.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [VTK-prefix/src/VTK-stamp/VTK-install] Error 2
make[1]: *** [CMakeFiles/VTK.dir/all] Error 2
make: *** [all] Error 2

Kindly rescue

Regards
Himanshu

[dorianps]

Looks like you are building VTK too. Is that intentional, do you need that?

I have a similar system that I am working to fix a few things. If you can't find the solution, I can try a fresh ANTs install in a few days.

[anshuhim20]

Thank you, Can you help me building VTK. currently facing the attached issue. I am using Redhat 7 operating system; trying to install ANT, which requires building of VTK. Below is the process I have performed the following commands: $ git clone https://github.com/ANTsX/ANT $ cd ANTs/ $ mkdir bin $ cd bin $ ccmake ../ Then configuring ANTs using parameters as shown below - - BUILD_TESTING: OFF - CMAKE_INSTALL_PREFIX: ./ - USE_VTK: ON - USE_SYSTEM_VTK: OFF After configuring when I do "make -j 1" - - The error is shown below and screenshot attached: - Performing download step (git clone) for 'ITKv4' [ 4%] Performing download step (git clone) for 'ITKv4' fatal: unable to connect to github.com: github.com[0: 20.207.73.82]: errno=Connection timed out Cloning into 'ITKv4'... fatal: unable to connect to github.com: github.com[0: 20.207.73.82]: errno=Connection timed out Cloning into 'ITKv4'... fatal: unable to connect to github.com: github.com[0: 20.207.73.82]: errno=Connection timed out Cloning into 'ITKv4'... -- Had to git clone more than once: 3 times. CMake Error at ITKv4-prefix/tmp/ITKv4-gitclone.cmake:40 (message): Failed to clone repository: 'git://github.com/InsightSoftwareConsortium/ITK.git' make[2]: *** [ITKv4-prefix/src/ITKv4-stamp/ITKv4-download] Error 1 make[1]: *** [CMakeFiles/ITKv4.dir/all] Error 2 make: *** [all] Error 2 *After failing to reach github 3 times the command fails to clone the repository. I am able to reproduce the same error in another workstation as well. Fronm the above details it is evident that this problem is happening due to a ping drop @ 20.207.73.82.* *Kindly suggest the needful* *Thanks and regards*

On Thu, Jul 14, 2022 at 11:43 PM dorianps ***@***.***> wrote: Looks like you are building VTK too. Is that intentional, do you need that? I have a similar system that I am working to fix a few things. If you can't find the solution, I can try a fresh ANTs install in a few days. — Reply to this email directly, view it on GitHub <#1371 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AFSFQ6NRXU4IVL4BZJZUC4DVUBKC3ANCNFSM5XXMUHCA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

Himanshu Joshi