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DOC: Clarify -a usage #1799

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Sep 27, 2024
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DOC: Clarify -a usage #1799

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8 changes: 5 additions & 3 deletions Examples/antsMotionCorr.cxx
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Original file line number Diff line number Diff line change
Expand Up @@ -1965,6 +1965,7 @@ antsMotionCorrInitializeCommandLineOptions(itk::ants::CommandLineParser * parser
OptionType::Pointer option = OptionType::New();
option->SetLongName("average-image");
option->SetShortName('a');
option->SetUsageOption(0, "<timeseries>");
option->SetDescription(description);
parser->AddOption(option);
}
Expand Down Expand Up @@ -2107,10 +2108,11 @@ antsMotionCorr(std::vector<std::string> args, std::ostream * /*out_stream = null
std::string("antsMotionCorr = motion correction. This program is a user-level ") +
std::string("registration application meant to utilize classes in ITK v4.0 or greater. The user can specify ") +
std::string("any number of \"stages\" where a stage consists of a transform; an image metric; ") +
std::string(" and iterations, shrink factors, and smoothing sigmas for each level. ") +
std::string("and iterations, shrink factors, and smoothing sigmas for each level. ") +
std::string(
" Specialized for 4D time series data: fixed image is 3D, moving image should be the 4D time series. ") +
std::string(" Fixed image is a reference space or time slice.");
"Specialized for 4D time series data: fixed image is 3D, moving image should be the 4D time series. ") +
std::string("Fixed image is a reference space or time slice. ") +
std::string("To create a reference image from the time series, use the -a option.");
parser->SetCommandDescription(commandDescription);
antsMotionCorrInitializeCommandLineOptions(parser);

Expand Down