Forelius

This release fixes a bug that caused Atropos to fail when using the HistogramParzenWindows likelihood model with multiple threads.

Script fixes and updates include better support for different head sizes in antsBrainExtraction.sh, and support for priors in BIDS format in antsCorticalThickness.sh.

The docker image is also updated (thanks @jennydaman) for improved performance and compatibility with different hardware architectures.

Update: added binaries for Apple Silicon with Mac OS 14.

What's Changed

• ENH: Remove system zlib from container by @cookpa in #1592
• COMP: Github windows runners were attempting to use deprecated by @cookpa in #1594
• COMP: need to import random by @cookpa in #1596
• BUG: check for required programs by @cookpa in #1600
• ENH: Allow priors to be specified with BIDS labels in ants*CorticalThickness.sh by @cookpa in #1604
• ENH: Clarify usage and catch missing ImageDimension by @cookpa in #1619
• ENH: Expose forward/inverse cumulative velocity fields. by @ntustison in #1630
• BUG: Template input overwritten when basename identical by @cookpa in #1635
• ENH: Better to use actual index into imageset array by @cookpa in #1636
• Make antsBrainExtraction.sh less sensitive to image size by @cookpa in #1640
• COMP: Fix some compile errors when legacy functionality is removed by @dzenanz in #1650
• A variety of compile fixes which appear when legacy is disabled by @dzenanz in #1651
• COMP: Avoid type conversion errors on Mac with new ITK by @cookpa in #1659
• COMP: Fix compile warning C4858: discarding return value in std::remove by @dzenanz in #1660
• COMP: Add missing include headers by @dzenanz in #1661
• COMP: Fix some CMake warnings by @cookpa in #1662
• ENH: Install cmake using apt by @jennydaman in #1647
• BUG: Stop segmentation fault when Atropos is multi-threaded by @cookpa in #1663
• ENH: Allow static libs, re-enable testing by @cookpa in #1665

New Contributors

• @dzenanz made their first contribution in #1650
• @jennydaman made their first contribution in #1647

Full Changelog: v2.5.0...v2.5.1