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ENH: Remove histogram matching.
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@ntustison
ntustison committed Aug 3, 2024
1 parent c7507fa commit 196cf39
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions antspynet/utilities/deep_atropos.py
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Original file line number Diff line number Diff line change
Expand Up @@ -212,18 +212,18 @@ def deep_atropos(t1,
antsxnet_cache_directory=antsxnet_cache_directory,
verbose=verbose)
n4 = n4 * t1_mask
n4 = ants.histogram_match_image2(n4, hcp_templates[i],
source_mask=t1_mask,
reference_mask=hcp_template_brain_mask)
# n4 = ants.histogram_match_image2(n4, hcp_templates[i],
# source_mask=t1_mask,
# reference_mask=hcp_template_brain_mask)
reg = ants.registration(hcp_templates[i], n4,
type_of_transform="antsRegistrationSyNQuickRepro[a]",
type_of_transform="antsRegistrationSyNQuick[a]",
verbose=verbose)
preprocessed_images.append(reg['warpedmovout'])
else:
n4 = n4 * t1_mask
n4 = ants.histogram_match_image2(n4, hcp_templates[i],
source_mask=t1_mask,
reference_mask=hcp_template_brain_mask)
# n4 = ants.histogram_match_image2(n4, hcp_templates[i],
# source_mask=t1_mask,
# reference_mask=hcp_template_brain_mask)
n4 = ants.apply_transforms(hcp_templates[i], n4,
transformlist=reg['fwdtransforms'],
verbose=verbose)
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