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@AUMC-HEMA

Amsterdam UMC Hematology Department

Code and resources from the Hematology Department at Amsterdam UMC
README.md 
Amsterdam UMC Hematology Department
┣━━ 📦 Open Source Packages
┃   ┗━━ MSGMM - Multi-sample Gaussian mixture models
┣━━ 🔬 Manuscripts
┃   ┗━━ imputation-manuscript - Imputation of cytometry data (Mocking et al., 2023)
┗━━ 👨‍💻 Contributors
    ┣━━ 👨‍💻 Postdoctoral scientists
    ┃   ┣━━ Costa Bachas - Senior Postdoc
    ┃   ┗━━ Philip Rutten - Postdoc
    ┣━━ 👨‍💻 PhD students
    ┃   ┗━━ Tim Mocking - Computational analysis of myeloid malignancies
    ┃   ┗━━ Tom Reuvekamp - Therapy dependent leukemic stem cell dynamics in acute myeloid leukemia
    ┃   ┗━━ Lukas Haaksma - Advanced measurable residual disease modeling in acute myeloid leukemia
    ┣━━ 👨‍💻 Students
    ┃   ┗━━ Felix van Zwolle - Intern MSc. Bioinformatics
    ┃   ┗━━ Eirini Papavasileiou - Intern MSc. Bioinformatics
    ┗━━ 👨‍💻 Alumni
    ┃   ┗━━ Lok Lam Ngai - Leukemic stem cell dynamics after induction chemotherapy in acute myeloid leukemia
    ┃   ┗━━ Jesse Tettero - Optimizing usage of measurable residual disease (MRD) for treatment decision making in acute myeloid leukemia
        ┗━━ Yejin Park - Intern MSc. Bioinformatics
    ┃   ┗━━ Dana Allen - Intern MSc. Bioinformatics

Popular repositories Loading

  1. imputation-manuscript imputation-manuscript Public

    This repository contains the code used in our benchmark of imputation tools for flow cytometry data.

    Jupyter Notebook 1

  2. MSGMM MSGMM Public

    The multi-sample Gaussian mixture model (MSGMM) is a clustering model adapted to fitting multiple samples simultaneously using the EM algorithm.

    R 1

  3. CytoTools CytoTools Public

    A small R package containing useful R functions for cytometry data for internal use.

    R

  4. .github .github Public

  5. cMRD-manuscript cMRD-manuscript Public

    Code used for computational detection of MRD in AML using flow cytometry data.

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • MSGMM Public

    The multi-sample Gaussian mixture model (MSGMM) is a clustering model adapted to fitting multiple samples simultaneously using the EM algorithm.

    AUMC-HEMA/MSGMM’s past year of commit activity
    R 1 0 0 0 Updated Nov 27, 2024
  • CytoTools Public

    A small R package containing useful R functions for cytometry data for internal use.

    AUMC-HEMA/CytoTools’s past year of commit activity
    R 0 0 0 0 Updated Sep 23, 2024
  • .github Public
    AUMC-HEMA/.github’s past year of commit activity
    0 0 0 0 Updated Aug 2, 2024
  • cMRD-manuscript Public

    Code used for computational detection of MRD in AML using flow cytometry data.

    AUMC-HEMA/cMRD-manuscript’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 16, 2024
  • imputation-manuscript Public

    This repository contains the code used in our benchmark of imputation tools for flow cytometry data.

    AUMC-HEMA/imputation-manuscript’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 26, 2023

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