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@AdelaideBioinfo

Adelson Bioinformatics Lab - University of Adelaide

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  1. horizontalTransfer horizontalTransfer Public

    Code used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.

    TeX 9 2

  2. L1-dynamics L1-dynamics Public

    Sample code to accompany the L1 evolutionary dynamics across eukaryotes manuscript. Shows how to perform two independent extraction methods: iterative search using LASTZ on genomic data, versus tra…

    Shell 2 2

  3. regionalGenomeTurnover regionalGenomeTurnover Public

    Scripts that were used in "Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse"

    R 2 1

  4. Tuatara-paper Tuatara-paper Public

    Contains the scripts used to analyse tuatara transposable elements, generate figures for tautara paper and infer phylogenies

    Shell 1 1

  5. HTT_detection HTT_detection Public

    Methods for detection of horizontal transfer of transposable elements from genome sequences. GPL version 3 license.

    R 1 1

  6. Elephant-project Elephant-project Public

    Contains the scripts used to convert BAM to BED, generate binary sequences and infer phylogenies.

    C++ 1

Repositories

Showing 7 of 7 repositories
  • HTT_detection Public

    Methods for detection of horizontal transfer of transposable elements from genome sequences. GPL version 3 license.

    AdelaideBioinfo/HTT_detection’s past year of commit activity
    R 1 GPL-3.0 1 0 0 Updated Apr 19, 2022
  • horizontalTransfer Public

    Code used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.

    AdelaideBioinfo/horizontalTransfer’s past year of commit activity
    TeX 9 GPL-3.0 2 0 0 Updated Apr 18, 2022
  • Tuatara-paper Public

    Contains the scripts used to analyse tuatara transposable elements, generate figures for tautara paper and infer phylogenies

    AdelaideBioinfo/Tuatara-paper’s past year of commit activity
    Shell 1 1 0 0 Updated May 28, 2020
  • regionalGenomeTurnover Public

    Scripts that were used in "Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse"

    AdelaideBioinfo/regionalGenomeTurnover’s past year of commit activity
    R 2 1 0 0 Updated May 3, 2019
  • retrotransposonAccumulation Public
    AdelaideBioinfo/retrotransposonAccumulation’s past year of commit activity
    R 0 0 0 0 Updated Apr 16, 2017
  • Elephant-project Public

    Contains the scripts used to convert BAM to BED, generate binary sequences and infer phylogenies.

    AdelaideBioinfo/Elephant-project’s past year of commit activity
    C++ 0 1 0 0 Updated Apr 6, 2017
  • L1-dynamics Public

    Sample code to accompany the L1 evolutionary dynamics across eukaryotes manuscript. Shows how to perform two independent extraction methods: iterative search using LASTZ on genomic data, versus translated nucleotide search of NCBI databases using TBLASTN. Subsequent analyses use programs such as MUSCLE, USEARCH, HMMER, etc.

    AdelaideBioinfo/L1-dynamics’s past year of commit activity
    Shell 2 2 0 0 Updated Nov 28, 2016

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