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Added two parameters to
SigProfilerClusters.analysis()
;field
andvcf_col
. Allows the use of e.g. Mutect2 VCFs, which have VAFs in column 11 and not at the end of the field, which is not supported by theTCGA
,sanger
, orstandardVC
. This PR allows the use of VAFs in subclassification with essentially any VCF that has VAFs without needing to modify the VCFs first.