Initiation of new Glioblastoma analysis module

[georginaalbadri]

Purpose/implementation Section

This pull request is to provide the template and draft README for a new analysis module for Glioblastoma, for project SCPCP000001.

Please link to the GitHub issue that this pull request addresses.

Issue 778

What is the goal of this pull request?

Initiation of the Python analysis module

Briefly describe the general approach you took to achieve this goal.

I ran create-analysis-module.py with handles --use-python, --use-jupyter, --use-conda

If known, do you anticipate filing additional pull requests to complete this analysis module?

Yes

[review-notebook-app]

Check out this pull request on 

See visual diffs & provide feedback on Jupyter Notebooks.

---

Powered by ReviewNB

[jashapiro]

Hello @georginaalbadri,

Thank you for your initial cointribution to OpenScPCA! Everything here looks good, with one comment about the format of the data download that might make things easier for your future work.

I also suggested adding celltypist as a dependency to the conda environment, as we may as well get that done now. If there are any other packages that you will need that you might know about already, you could add those as well.

Finally, I noticed that you are using your main branch for this pull request. That is fine, especially at this stage, but in the future I would suggest making new branches in your fork for each new pull request, as that will make it easier for you to potentially work on different phases of the analysis while one part is in review or if you need to keep things separate for other reasons.

[georginaalbadri]

Thanks for your additions, hopefully it is good to go! I will bear in mind using different branches for pull requests going forward

[jashapiro]

Looks good! Thank you again for your first contribution @georginaalbadri, and I look forward to seeing the next steps in your analysis!