2024-11-07

What's Changed

• Initiate hello-clusters by @sjspielman in #805
• Add biocViews to rOpenScPCA by @sjspielman in #807
• Scripts to run copykat and infercnv for a subselection of Wilms tumor from SCPCP000006 by @maud-p in #801
• Switch to using precommit action locally by @jashapiro in #820
• SCPCP000006_05_explore_COPYKAT by @maud-p in #813
• cell type/tumor annotation for ETP T-ALL (SCPCP000003) by @UTSouthwesternDSSR in #826
• Add fetusref.SeuratData to renv by @jashapiro in #831
• Add rOpenScPCA install instructions by @sjspielman in #833
• Exploratory CNV notebook for Wilms tumor annotation (SCPCP000014) by @JingxuanChen7 in #825
• Attempt to identify tumor cells in those non-ETP samples without B cells (SCPCP000003) by @UTSouthwesternDSSR in #815
• Included initial exploratory analysis notebook by @danhtruong in #794
• Add docker image for cell-type-wilms-tumor-14 by @jashapiro in #841
• 04- Explore the mapping scores for Wilms tumor -06 by @maud-p in #835
• 06 explore infercnv for Wilms tumor -06 by @maud-p in #828
• Adding SCTransform as an alternative to anchor transfer-Wilms tumor annotation (SCPCP000014) by @JingxuanChen7 in #836
• Add words to dictionary by @sjspielman in #845
• Add rough tumor classification into the result table-Wilms tumor annotation (SCPCP000014) by @JingxuanChen7 in #846
• Update hello-python docker image by @jashapiro in #850
• Draft annotation by @maud-p in #844
• Exploratory results for inferCNV on non-ETP samples (SCPCP000003) by @UTSouthwesternDSSR in #838
• Submission table for cell type and tumor classification of ETP T-ALL (SCPCP000003) by @UTSouthwesternDSSR in #847
• Remove rOpenScPCA from this repo by @sjspielman in #861

Full Changelog: 2024-10-09...2024-11-07