This is the version of the code used to generate the figures from the Nature paper:
Viana, M. P., Chen, J., Knijnenburg, T. A., Vasan, R., Yan, C., Arakaki, J. E., ... & Rafelski, S. M. (2023). Integrated intracellular organization and its variations in human iPS cells. Nature, 613(7943), 345-354.