Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 8
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- openscope-community-predictive-processing Public
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
- zombie-squirrel Public
Caching tools for storing expensive DocDB queries and S3 data tables in Redshift
- aind-software-docs Public
Centralized documentation repository for Scientific Computing, publishes to RTD
- aind-torch-utils Public
Generic, queue-based, multi-GPU PyTorch inference pipeline for large volumetric (3D or 5D T,C,Z,Y,X) data.
- ibl-ephys-alignment-gui Public Forked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks