Skip to content
/ connectome_from_dwi Public

I developed this code in my internship at the Fetal-Neonatal Neuroimaging and Developmental Science Center (FNNDSC) at Boston Children's Hospital to create a connectome from DWI. This repository doesn't contain the full project, instead it only reflects part of my gained experience and may be used for future references.

0 stars 0 forks Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

AlmaCuevas/connectome_from_dwi

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

2 Commits
.idea
.idea
 
 
2_e2_create_job_scripts_for_subjects_FS_recon.sh
2_e2_create_job_scripts_for_subjects_FS_recon.sh
 
 
3_create_scripts_Diffusion.sh
3_create_scripts_Diffusion.sh
 
 
4_e2_create_job_scripts_tractography_dti.sh
4_e2_create_job_scripts_tractography_dti.sh
 
 
5_e2_create_job_scripts_Connectome.sh
5_e2_create_job_scripts_Connectome.sh
 
 
6_e2_create_job_scripts_spared_post.sh
6_e2_create_job_scripts_spared_post.sh
 
 
AlmaCuevas_Sep21Jan22_FinalPresentation.pptx
AlmaCuevas_Sep21Jan22_FinalPresentation.pptx
 
 
Combine_BCT_stats.m
Combine_BCT_stats.m
 
 
README.md
README.md
 
 
Stats_code.R
Stats_code.R
 
 
View_Connectome.m
View_Connectome.m
 
 
Visualize_connectome.py
Visualize_connectome.py
 
 
Visualize_connectome.sh
Visualize_connectome.sh
 
 
bct_functions.py
bct_functions.py
 
 
bct_functions_FA.py
bct_functions_FA.py
 
 
bct_functions_FA.sh
bct_functions_FA.sh
 
 
bct_functions_strength.py
bct_functions_strength.py
 
 
bct_functions_temp.sh
bct_functions_temp.sh
 
 
bvecs_sphere_positions.m
bvecs_sphere_positions.m
 
 
connectome.sh
connectome.sh
 
 
connectome_spared_post.sh
connectome_spared_post.sh
 
 
dMRI_pipeline.sh
dMRI_pipeline.sh
 
 
dMRI_pipeline_dwifsl.sh
dMRI_pipeline_dwifsl.sh
 
 
dMRI_pipeline_post_dwifsl.sh
dMRI_pipeline_post_dwifsl.sh
 
 
dicom_reading.m
dicom_reading.m
 
 
dt_correction.sh
dt_correction.sh
 
 
dti_tractography.sh
dti_tractography.sh
 
 
fdt_rotate_bvecs.sh
fdt_rotate_bvecs.sh
 
 
means.m
means.m
 
 
open_files.sh
open_files.sh
 
 
outlier_report2vols.sh
outlier_report2vols.sh
 
 
run_loop_function.sh
run_loop_function.sh
 
 
run_loop_function_numbers.sh
run_loop_function_numbers.sh
 
 
run_loop_numbers_connectome_spared.sh
run_loop_numbers_connectome_spared.sh
 
 
script_loop.sh
script_loop.sh
 
 
spared_post.sh
spared_post.sh
 
 

Repository files navigation

Technical processing of diffusion MRI data for connectomics in pre- and post-surgical patients with drug-resistance epilepsy

Author: Alma Rosa Cuevas Romero

Supervisor: Ai Wern Chung

For a better explanation, check the presentation.

Disclaimer: This code is published for educational purposes, it does not represent the complete project but rather part of my experience as a research assistant in my internship.

About

I developed this code in my internship at the Fetal-Neonatal Neuroimaging and Developmental Science Center (FNNDSC) at Boston Children's Hospital to create a connectome from DWI. This repository doesn't contain the full project, instead it only reflects part of my gained experience and may be used for future references.

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages