Analysis of growth cone extension in standardized coordinates highlights self-organization rules during wiring of the Drosophila visual system

This repository contains data analysis codes for manuscript "Analysis of growth cone extension in standardized coordinates highlights self-organization rules during wiring of the Drosophila visual system"

Contents

image_preprocessing

This folder contains ImageJ macro scripts to batch process images obtained from Nikon confocal images. Processing include format change (from .nd2 to .tif) and background subtraction.

image_quantification

This folder contains python scripts to transform annotated images using the standardized coordinate system described in the manuscript.

figure_generation

This folder contains python scripts and a jupyter notebook to generate figures in the manuscript.