Fix parallel handling of data in repeated trajectory runs for 'rotate' and 'average' #482

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Run time

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Job	Run time
build-pytraj	10m 40s
Build gnu with CMake 0	9m 8s
Build gnu with CMake 1	6m 36s
Build clang with CMake 0	9m 5s
Build clang with CMake 1	6m 30s
Build gnu with CMake 0	8m 34s
Build gnu with CMake 0	20m 52s
Build gnu with CMake 0	24m 44s
Build gnu with CMake 1	18m 46s
	1h 54m 55s