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requirements.txt
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#
# This file is autogenerated by pip-compile with Python 3.13
# by the following command:
#
# pip-compile requirements.in
#
antlr4-python3-runtime==4.9.3
# via pyjsg
anyio==4.6.2.post1
# via
# httpx
# jupyter-server
appdirs==1.4.4
# via hyputils
appnope==0.1.4
# via ipykernel
argon2-cffi==23.1.0
# via jupyter-server
argon2-cffi-bindings==21.2.0
# via argon2-cffi
arrow==1.3.0
# via isoduration
asttokens==2.4.1
# via stack-data
async-lru==2.0.4
# via jupyterlab
attrs==24.2.0
# via
# jsonschema
# referencing
augpathlib==0.0.31
# via pyontutils
babel==2.16.0
# via jupyterlab-server
bcp47==0.1.0
# via funowl
beautifulsoup4==4.12.3
# via nbconvert
bleach==6.2.0
# via nbconvert
cachetools==5.5.0
# via
# google-auth
# pyld
certifi==2024.8.30
# via
# httpcore
# httpx
# hyputils
# requests
cffi==1.17.1
# via argon2-cffi-bindings
charset-normalizer==3.4.0
# via requests
clifn==0.0.1
# via pyontutils
colorlog==6.9.0
# via pyontutils
comm==0.2.2
# via
# ipykernel
# ipywidgets
debugpy==1.8.8
# via ipykernel
decorator==5.1.1
# via ipython
defusedxml==0.7.1
# via nbconvert
docopt==0.6.2
# via
# clifn
# pyontutils
executing==2.1.0
# via stack-data
fastjsonschema==2.20.0
# via nbformat
file-magic==0.4.1
# via augpathlib
fqdn==1.5.1
# via jsonschema
frozendict==2.4.6
# via pyld
funowl==0.2.3
# via pyontutils
gitdb==4.0.11
# via gitpython
gitpython==3.1.43
# via pyontutils
google-api-core==2.23.0
# via google-api-python-client
google-api-python-client==2.153.0
# via pyontutils
google-auth==2.36.0
# via
# google-api-core
# google-api-python-client
# google-auth-httplib2
# google-auth-oauthlib
google-auth-httplib2==0.2.0
# via google-api-python-client
google-auth-oauthlib==1.2.1
# via pyontutils
googleapis-common-protos==1.66.0
# via google-api-core
h11==0.14.0
# via httpcore
htmlfn==0.0.4
# via pyontutils
httpcore==1.0.6
# via httpx
httplib2==0.22.0
# via
# google-api-python-client
# google-auth-httplib2
httpx==0.27.2
# via jupyterlab
hyputils==0.0.9
# via neurondm
idlib==0.0.1.dev21
# via pyontutils
idna==3.10
# via
# anyio
# httpx
# jsonschema
# requests
igraph==0.11.8
# via -r requirements.in
ipycytoscape==1.3.3
# via -r requirements.in
ipykernel==6.29.5
# via
# -r requirements.in
# jupyter
# jupyter-console
# jupyterlab
ipython==8.29.0
# via
# ipykernel
# ipywidgets
# jupyter-console
ipywidgets==8.1.5
# via
# ipycytoscape
# jupyter
isoduration==20.11.0
# via jsonschema
jedi==0.19.2
# via ipython
jinja2==3.1.4
# via
# jupyter-server
# jupyterlab
# jupyterlab-server
# nbconvert
joblib==1.4.2
# via pyontutils
json5==0.9.28
# via jupyterlab-server
jsonasobj==1.3.1
# via
# funowl
# pyjsg
jsonpointer==3.0.0
# via jsonschema
jsonschema[format-nongpl]==4.23.0
# via
# jupyter-events
# jupyterlab-server
# nbformat
jsonschema-specifications==2024.10.1
# via jsonschema
jupyter==1.1.1
# via -r requirements.in
jupyter-client==8.6.3
# via
# ipykernel
# jupyter-console
# jupyter-server
# nbclient
jupyter-console==6.6.3
# via jupyter
jupyter-core==5.7.2
# via
# ipykernel
# jupyter-client
# jupyter-console
# jupyter-server
# jupyterlab
# nbclient
# nbconvert
# nbformat
jupyter-events==0.10.0
# via jupyter-server
jupyter-lsp==2.2.5
# via jupyterlab
jupyter-server==2.14.2
# via
# jupyter-lsp
# jupyterlab
# jupyterlab-server
# notebook
# notebook-shim
jupyter-server-terminals==0.5.3
# via jupyter-server
jupyterlab==4.2.5
# via
# jupyter
# notebook
jupyterlab-pygments==0.3.0
# via nbconvert
jupyterlab-server==2.27.3
# via
# jupyterlab
# notebook
jupyterlab-widgets==3.0.13
# via ipywidgets
lxml==5.3.0
# via
# pyld
# pyontutils
mapknowledge @ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.20.4/mapknowledge-0.20.4-py3-none-any.whl
# via -r requirements.in
markdown-it-py==3.0.0
# via rich
markupsafe==3.0.2
# via
# jinja2
# nbconvert
matplotlib-inline==0.1.7
# via
# ipykernel
# ipython
mdurl==0.1.2
# via markdown-it-py
mistune==3.0.2
# via nbconvert
nbclient==0.10.0
# via nbconvert
nbconvert==7.16.4
# via
# jupyter
# jupyter-server
nbformat==5.10.4
# via
# jupyter-server
# nbclient
# nbconvert
nest-asyncio==1.6.0
# via
# ipykernel
# pyontutils
networkx==3.4.2
# via
# -r requirements.in
# mapknowledge
neurondm @ https://github.com/tgbugs/pyontutils/releases/download/neurondm-0.1.8/neurondm-0.1.8-py2.py3-none-any.whl
# via mapknowledge
notebook==7.2.2
# via jupyter
notebook-shim==0.2.4
# via
# jupyterlab
# notebook
numpy==2.1.3
# via pandas
oauthlib==3.2.2
# via requests-oauthlib
ontquery==0.2.11
# via pyontutils
orthauth[sxpr,yaml]==0.0.18
# via
# idlib
# pyontutils
overrides==7.7.0
# via jupyter-server
packaging==24.2
# via
# ipykernel
# jupyter-server
# jupyterlab
# jupyterlab-server
# nbconvert
pandas==2.2.3
# via -r requirements.in
pandocfilters==1.5.1
# via nbconvert
parso==0.8.4
# via jedi
pexpect==4.9.0
# via
# augpathlib
# ipython
platformdirs==4.3.6
# via jupyter-core
prometheus-client==0.21.0
# via jupyter-server
prompt-toolkit==3.0.48
# via
# ipython
# jupyter-console
proto-plus==1.25.0
# via google-api-core
protobuf==5.28.3
# via
# google-api-core
# googleapis-common-protos
# proto-plus
psutil==6.1.0
# via
# hyputils
# ipykernel
ptyprocess==0.7.0
# via
# pexpect
# terminado
pure-eval==0.2.3
# via stack-data
pyasn1==0.6.1
# via
# pyasn1-modules
# rsa
pyasn1-modules==0.4.1
# via google-auth
pycparser==2.22
# via cffi
pygments==2.18.0
# via
# ipython
# jupyter-console
# nbconvert
# rich
pyjsg==0.11.10
# via funowl
pyld==2.0.4
# via pyontutils
pyontutils==0.1.34
# via neurondm
pyparsing==3.2.0
# via
# httplib2
# rdflib
python-dateutil==2.9.0.post0
# via
# arrow
# augpathlib
# jupyter-client
# pandas
python-json-logger==2.0.7
# via jupyter-events
pytz==2024.2
# via pandas
pyxattr==0.8.1
# via augpathlib
pyyaml==6.0.2
# via
# jupyter-events
# orthauth
# pyontutils
pyzmq==26.2.0
# via
# ipykernel
# jupyter-client
# jupyter-console
# jupyter-server
rdflib==7.1.1
# via
# funowl
# mapknowledge
# rdflib-jsonld
# rdflib-shim
# sparqlwrapper
# ttlser
rdflib-jsonld==0.6.1
# via rdflib-shim
rdflib-shim==1.0.3
# via funowl
referencing==0.35.1
# via
# jsonschema
# jsonschema-specifications
# jupyter-events
requests==2.32.3
# via
# google-api-core
# hyputils
# idlib
# jupyterlab-server
# mapknowledge
# pyontutils
# requests-oauthlib
requests-oauthlib==2.0.0
# via google-auth-oauthlib
rfc3339-validator==0.1.4
# via
# jsonschema
# jupyter-events
rfc3986-validator==0.1.1
# via
# jsonschema
# jupyter-events
rfc3987==1.3.8
# via funowl
rich==13.9.4
# via mapknowledge
rpds-py==0.21.0
# via
# jsonschema
# referencing
rsa==4.9
# via google-auth
send2trash==1.8.3
# via jupyter-server
six==1.16.0
# via
# asttokens
# python-dateutil
# rfc3339-validator
smmap==5.0.1
# via gitdb
sniffio==1.3.1
# via
# anyio
# httpx
soupsieve==2.6
# via beautifulsoup4
sparqlwrapper==2.0.0
# via mapknowledge
spectate==1.0.1
# via ipycytoscape
stack-data==0.6.3
# via ipython
structlog==24.4.0
# via mapknowledge
sxpyr==0.0.4
# via orthauth
terminado==0.18.1
# via
# jupyter-server
# jupyter-server-terminals
terminaltables==3.1.10
# via
# augpathlib
# clifn
# pyontutils
texttable==1.7.0
# via igraph
tinycss2==1.4.0
# via nbconvert
tornado==6.4.1
# via
# ipykernel
# jupyter-client
# jupyter-server
# jupyterlab
# notebook
# terminado
tqdm==4.67.0
# via -r requirements.in
traitlets==5.14.3
# via
# comm
# ipykernel
# ipython
# ipywidgets
# jupyter-client
# jupyter-console
# jupyter-core
# jupyter-events
# jupyter-server
# jupyterlab
# matplotlib-inline
# nbclient
# nbconvert
# nbformat
ttlser==1.1.5
# via pyontutils
types-python-dateutil==2.9.0.20241003
# via arrow
tzdata==2024.2
# via pandas
uri-template==1.3.0
# via jsonschema
uritemplate==4.1.1
# via google-api-python-client
urllib3==2.2.3
# via requests
wcwidth==0.2.13
# via prompt-toolkit
webcolors==24.11.1
# via jsonschema
webencodings==0.5.1
# via
# bleach
# tinycss2
websocket-client==1.8.0
# via jupyter-server
websockets==14.1
# via hyputils
widgetsnbextension==4.0.13
# via ipywidgets
# The following packages are considered to be unsafe in a requirements file:
# setuptools