human-nerves

Repository to archive and share information about the human nerves.

Instructions:

1. Create a virtul environment : e.g.pyenv virtualenv 3.12 human-nerves-env
2. Activate the virtual environment e.g. pyenv activate human-nerves-env
3. Install required libraries e.g. pip install -r requirements.txt
4. Don't forget to export SCICRUNCH_API_KEY password e.g. export SCICRUNCH_API_KEY=XXXXX
5. All god now, run jupyter notebook from terminal and then open reroute.ipynb.

Checking current coverage:

python nerve-testing.py sckan-2024-09-21 nerve_point_annotations.json M2.6_3D_whole-body.csv

params:

• sckan-version
• nerve point annotation (manInBox) file
• nerve pathway file