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Improve efficiency for processing CellProfiler output #3

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tcrombie opened this issue May 17, 2022 · 0 comments
Open

Improve efficiency for processing CellProfiler output #3

tcrombie opened this issue May 17, 2022 · 0 comments
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enhancement New feature or request

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@tcrombie
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The processing of CellProfiler output is written inefficiently. This process uses find to identify files to move from all the group subdirectories for a project, it can take 40 min on larger on a 16k image dataset.

Quick suggestion in code/noncode, lol:

  1. cat */{model_name}.csv > unpublished file
  2. sed “remove header” from upublished file > publish final .csv
@tcrombie tcrombie added the enhancement New feature or request label May 17, 2022
@tcrombie tcrombie self-assigned this Jun 20, 2022
@bkohrn bkohrn mentioned this issue Nov 15, 2022
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