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1. google/deepvariant google/deepvariant Public

   DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

   Python 3.2k 729

2. dnanexus/dx-toolkit dnanexus/dx-toolkit Public

   DNAnexus platform client libraries

   Python 90 86

3. dnanexus-archive/parliament2 dnanexus-archive/parliament2 Public archive

   Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

   Python 102 40