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GitHub Issue NOAA-EMC#123. OznMon update and bugzilla fixes.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,205 @@ | ||
| #!/bin/bash | ||
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| #-------------------------------------------------------------------- | ||
| # OznMon_CP.sh | ||
| # | ||
| # This script searches for new oznmon output from the global GDAS | ||
| # and copies those filess to the user's $TANKDIR directory under | ||
| # the specified suffix argument. | ||
| # | ||
| # The bad_penalty, low count, and missing diag reports are | ||
| # reevaluated using local copies of the base file and satype | ||
| # files in the $TANKdir/$suffix/info directory. | ||
| # | ||
| # Note that processing occurs within TANKdir, not in stmp space. | ||
| # | ||
| # The unified error report is journaled to warning.${PDY}${CYC}. | ||
| # | ||
| #-------------------------------------------------------------------- | ||
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| function usage { | ||
| echo "Usage: OznMon_CP_glb.sh suffix [-r|--run gdas|gfs -p|--pdate yyyymmddhh" | ||
| echo "" | ||
| echo " Suffix (NET) is the indentifier for this data source." | ||
| echo "" | ||
| echo " -r|--run is the run value, typically gdas or gfs. Default value is gdas." | ||
| echo "" | ||
| echo " -p|--pdate is 10 digit yyyymmddhh string of cycle to be copied." | ||
| echo " If not specified the pdate will be calculated by finding the latest" | ||
| echo " cycle time in $OZN_STATS_TANKDIR and incrementing it by 6 hours." | ||
| echo "" | ||
| echo " --oznf parent directory to file location. This will be extended by " | ||
| echo " $RUN.$PDY/$CYC/atmos/oznmon and the files there copied to OZN_STATS_TANKDIR." | ||
| echo "" | ||
| echo " --ostat directory of oznstat file." | ||
| } | ||
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| echo start OznMon_CP.sh | ||
| exit_value=0 | ||
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| nargs=$# | ||
| if [[ $nargs -le 0 || $nargs -gt 7 ]]; then | ||
| usage | ||
| exit 1 | ||
| fi | ||
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| set -ax | ||
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| #----------------------------------------------------------- | ||
| # Set default values and process command line arguments. | ||
| # | ||
| run=gdas | ||
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| while [[ $# -ge 1 ]] | ||
| do | ||
| key="$1" | ||
| echo $key | ||
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| case $key in | ||
| -p|--pdate) | ||
| pdate="$2" | ||
| shift # past argument | ||
| ;; | ||
| -r|--run) | ||
| run="$2" | ||
| shift # past argument | ||
| ;; | ||
| --oznf) | ||
| oznmon_file_loc="$2" | ||
| shift # past argument | ||
| ;; | ||
| --ostat) | ||
| oznmon_stat_loc="$2" | ||
| shift # past argument | ||
| ;; | ||
| *) | ||
| #any unspecified key is OZNMON_SUFFIX | ||
| export OZNMON_SUFFIX=$key | ||
| ;; | ||
| esac | ||
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| shift | ||
| done | ||
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| echo "OZNMON_SUFFIX = $OZNMON_SUFFIX" | ||
| echo "run = $run" | ||
| echo "pdate = $pdate" | ||
| echo "oznmon_file_loc = ${oznmon_file_loc}" | ||
| echo "oznmon_stat_loc = ${oznmon_stat_loc}" | ||
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| export RUN=${RUN:-${run}} | ||
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| #-------------------------------------------------------------------- | ||
| # Set environment variables | ||
| #-------------------------------------------------------------------- | ||
| this_dir=`dirname $0` | ||
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| top_parm=${this_dir}/../../parm | ||
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| oznmon_user_settings=${oznmon_user_settings:-${top_parm}/OznMon_user_settings} | ||
| if [[ -s ${oznmon_user_settings} ]]; then | ||
| . ${oznmon_user_settings} | ||
| echo "able to source ${oznmon_user_settings}" | ||
| else | ||
| echo "Unable to source ${oznmon_user_settings} file" | ||
| exit 4 | ||
| fi | ||
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| oznmon_config=${oznmon_config:-${top_parm}/OznMon_config} | ||
| if [[ -s ${oznmon_config} ]]; then | ||
| . ${oznmon_config} | ||
| echo "able to source ${oznmon_config}" | ||
| else | ||
| echo "Unable to source ${oznmon_config} file" | ||
| exit 3 | ||
| fi | ||
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| if [[ ${oznmon_stat_loc} = "" ]]; then | ||
| oznmon_stat_loc=${OZNSTAT_LOCATION} | ||
| fi | ||
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| #--------------------------------------------------------------- | ||
| # Create any missing directories. | ||
| #--------------------------------------------------------------- | ||
| if [[ ! -d ${OZN_STATS_TANKDIR} ]]; then | ||
| mkdir -p ${OZN_STATS_TANKDIR} | ||
| fi | ||
| if [[ ! -d ${OZN_LOGdir} ]]; then | ||
| mkdir -p ${OZN_LOGdir} | ||
| fi | ||
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| #--------------------------------------------------------------- | ||
| # If the pdate (processing date) was not specified at the | ||
| # command line then set it by finding the latest cycle in | ||
| # $TANKverf and increment 6 hours. | ||
| #--------------------------------------------------------------- | ||
| if [[ $pdate = "" ]]; then | ||
| ldate=`${OZN_DE_SCRIPTS}/find_cycle.pl --run $RUN --cyc 1 --dir ${OZN_STATS_TANKDIR}` | ||
| pdate=`${NDATE} +06 ${ldate}` | ||
| fi | ||
| export PDATE=${pdate} | ||
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| export PDY=`echo $PDATE|cut -c1-8` | ||
| export CYC=`echo $PDATE|cut -c9-10` | ||
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| #--------------------------------------------------------------- | ||
| # Verify the data files are available | ||
| #--------------------------------------------------------------- | ||
| export OZNSTAT_LOCATION=${oznmon_stat_loc}/${RUN}.${PDY}/${CYC}/atmos | ||
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| #--------------------------------------------------------------- | ||
| # Location of the oznmon files is an adventure. The if case | ||
| # is the default gfs output location. Para runs are handled | ||
| # in the else condition | ||
| # | ||
| if [[ ${oznmon_file_loc} = "" ]]; then | ||
| data_location=${OZNSTAT_LOCATION}/oznmon | ||
| else | ||
| data_location=${oznmon_file_loc} | ||
| if [[ -d ${data_location}/${RUN}.${PDY} ]]; then | ||
| data_location=${data_location}/${RUN}.${PDY} | ||
| fi | ||
| fi | ||
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| export DATA_LOCATION=${data_location} | ||
| echo "DATA_LOCATION = ${DATA_LOCATION}" | ||
| nfile_src=`ls -l ${DATA_LOCATION}/time/*${PDATE}*ieee_d* | egrep -c '^-'` | ||
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| export OZNSTAT=${OZNSTAT_LOCATION}/${RUN}.t${CYC}z.oznstat | ||
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| if [[ ${nfile_src} -gt 0 ]]; then | ||
| job=${OZN_DE_SCRIPTS}/oznmon_copy.sh | ||
| jobname=OznMon_CP_${OZNMON_SUFFIX} | ||
| logfile=${OZN_LOGdir}/CP.${PDY}.${CYC}.log | ||
| if [[ -e ${logfile} ]]; then | ||
| rm -f ${logfile} | ||
| fi | ||
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| if [[ $MY_MACHINE = "wcoss_d" ]]; then | ||
| $SUB -q $JOB_QUEUE -P $PROJECT -o ${logfile} \ | ||
| -M 80 -R affinity[core] -W 0:10 -J ${jobname} -cwd ${PWD} ${job} | ||
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| elif [[ $MY_MACHINE = "wcoss_c" ]]; then | ||
| $SUB -q $JOB_QUEUE -P $PROJECT -o ${logfile} \ | ||
| -M 100 -W 0:20 -J ${jobname} -cwd ${PWD} ${job} | ||
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| elif [[ $MY_MACHINE = "hera" ]]; then | ||
| $SUB --account=${ACCOUNT} --time=10 -J ${jobname} -D . \ | ||
| -o ${logfile} --ntasks=1 --mem=5g ${job} | ||
| fi | ||
| else | ||
| echo "Unable to locate DATA_LOCATION: ${DATA_LOCATION}" | ||
| exit_value=4 | ||
| fi | ||
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| echo end OznMon_CP.sh | ||
| exit ${exit_value} | ||
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