Skip to content
@Arcadia-Science

Arcadia Science

README.md

Welcome to @Arcadia-Science!

At Arcadia, one of our central tenets is that our science should be maximally useful. Computational tasks are embedded in all aspects of our scientific inquiry, so we need our computing strategies to be maximally useful too. What does this mean? In addition to aligning with scientific priorities across Arcadia, we believe that useful computing is ✨ innovative, 👩‍💻usable, 🔁 reproducible. Read more about our efforts.

Popular repositories Loading

  1. metagenomics metagenomics Public

    A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

    Nextflow 37 3

  2. readlif readlif Public

    Leica Image Format (LIF) file reader for Python

    Python 34 13

  3. ProteinCartography ProteinCartography Public

    a pipeline to build similarity maps of protein space

    Jupyter Notebook 31 10

  4. seqqc seqqc Public

    A Nextflow pipeline to identify quality control issues with new sequencing data.

    Groovy 28

  5. sourmashconsumr sourmashconsumr Public

    Working with the outputs of sourmash in R

    Standard ML 26 3

  6. 2023-nr-clustering 2023-nr-clustering Public

    Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.

    Python 23 2

Repositories

Showing 10 of 87 repositories
  • arcadia-pycolor Public

    Python package for styling plots according to Arcadia's style guide

    Arcadia-Science/arcadia-pycolor’s past year of commit activity
    Python 5 MIT 0 13 (1 issue needs help) 0 Updated Feb 14, 2025
  • arcadia-twitter-collections Public

    Services to manage set of Twitter collections for Arcadia's publications

    Arcadia-Science/arcadia-twitter-collections’s past year of commit activity
    Python 1 CC0-1.0 0 0 0 Updated Feb 14, 2025
  • ramanalysis Public

    Package for loading and processing spectral data from Arcadia's Raman spectroscopy instruments.

    Arcadia-Science/ramanalysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 13, 2025
  • readlif Public

    Leica Image Format (LIF) file reader for Python

    Arcadia-Science/readlif’s past year of commit activity
    Python 34 GPL-3.0 13 19 3 Updated Feb 6, 2025
  • 2024-ProteinCartography-dCK-validation Public
    Arcadia-Science/2024-ProteinCartography-dCK-validation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 5, 2025
  • 2024-paired-token-masking Public
    Arcadia-Science/2024-paired-token-masking’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 3, 2025
  • notebook-pub-template Public template
    Arcadia-Science/notebook-pub-template’s past year of commit activity
    Jupyter Notebook 1 MIT 0 1 1 Updated Feb 3, 2025
  • arcadia-software-handbook Public

    Core software engineering guides and policies at Arcadia Science

    Arcadia-Science/arcadia-software-handbook’s past year of commit activity
    Makefile 3 CC0-1.0 0 0 0 Updated Jan 29, 2025
  • .github Public
    Arcadia-Science/.github’s past year of commit activity
    0 0 0 0 Updated Jan 29, 2025
  • 2024-organismal-selection Public

    Code associated with the pub "Leveraging evolution to identify novel organismal models of human biology"

    Arcadia-Science/2024-organismal-selection’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 8, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…