fix config ref

AroneyS · Jan 23, 2025 · 753b9cb · 753b9cb
1 parent e10cae3
commit 753b9cb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/binchicken/workflow/coassemble.smk b/binchicken/workflow/coassemble.smk
@@ -863,7 +863,7 @@ rule aviary_recover:
         conda_prefix = config["conda_prefix"] if config["conda_prefix"] else ".",
         singlem_metapackage = config["singlem_metapackage"],
         fast = "--binning-only --refinery-max-iterations 0" if config["aviary_speed"] == FAST_AVIARY_MODE else "",
-        extra_binners = "--extra-binners " + " ".join(config["extra_binners"]) if config["extra_binners"] else "",
+        extra_binners = "--extra-binners " + " ".join(config["aviary_extra_binners"]) if config["aviary_extra_binners"] else "",
         snakemake_profile = f"--snakemake-profile {config['snakemake_profile']}" if config["snakemake_profile"] else "",
         cluster_retries = f"--cluster-retries {config['cluster_retries']}" if config["cluster_retries"] else "",
         tmpdir = f"TMPDIR={config['tmpdir']}" if config["tmpdir"] else "",