Update slurm_cluster_info.json (#1889)

* Update slurm_cluster_info.json

updated `worker_bin_path` to match install path

* Update 03-install_cryosparc.sh.j2

added section to connect worker nodes to the master

playbooks/roles/cyclecloud_cluster/projects/cryosparc/cluster-init/files/slurm_cluster_info.json

@@ -1,6 +1,6 @@
 {
     "name": "PARTITION",
-    "worker_bin_path": "/anfhome/apps/cryosparc_worker/bin/cryosparcw",
+    "worker_bin_path": "/anfhome/apps/cryosparc/cryosparc_worker/bin/cryosparcw",
     "cache_path": "/mnt/resource",
     "send_cmd_tpl": "{{ command }}",
     "qsub_cmd_tpl": "sbatch {{ script_path_abs }}",

playbooks/roles/cyclecloud_cluster/projects/cryosparc/cluster-init/scripts/03-install_cryosparc.sh.j2

@@ -1,17 +1,26 @@
 #!/bin/bash
 set -e
 
-# Run only on CryoSPARC master node
-[ $(hostname) != {{ applications.cryosparc.master_hostname }} ] && exit 0
-
 export INSTALL_DIR=/anfhome/apps/cryosparc
 SOURCES_DIR=${INSTALL_DIR}/sources
 
+# connect worker nodes to the master
+if [[ $(hostname) != {{ applications.cryosparc.master_hostname }} ]]; then
+    sudo chmod 777 /mnt
+    sudo su -c "$INSTALL_DIR/cryosparc_worker/bin/cryosparcw connect --worker $(hostname) \
+    --master {{ applications.cryosparc.master_hostname }} \
+    --port 39000 --ssdpath /mnt/" {{ applications.cryosparc.admin_user }}
+fi
+
+# Run only on CryoSPARC master node
+[ $(hostname) != {{ applications.cryosparc.master_hostname }} ] && exit 0
+
 ###################################################
 # Install CryoSPARC master locally on master node #
 ###################################################
 
 # CryoSPARC master must be installed as admin user
+sudo chown {{ applications.cryosparc.admin_user }} /cryosparc_data
 sudo -i -u {{ applications.cryosparc.admin_user }} bash << EOF
 cd /cryosparc_data
 tar xzf ${SOURCES_DIR}/cryosparc_master.tar.gz
@@ -62,6 +71,5 @@ export CUDA_PATH
 sudo -i -u {{ applications.cryosparc.admin_user }} bash << EOF
 cd ${INSTALL_DIR}/cryosparc_worker
 ./install.sh --license {{ applications.cryosparc.license_id }} \
-             --cudapath ${CUDA_PATH} \
              --yes
 EOF