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Fix bug - empty performance table #28

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Jul 6, 2022
Merged

Fix bug - empty performance table #28

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22 changes: 19 additions & 3 deletions templates/compile_reports.py
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Original file line number Diff line number Diff line change
Expand Up @@ -202,6 +202,7 @@ def process_performance_data(pipeline_stats, versions_json, containers_config):
# parse assembler versions
with open(versions_json) as f:
assembler_versions = json.load(f)
print(assembler_versions)

# parse containers config
containers = {}
Expand All @@ -211,12 +212,15 @@ def process_performance_data(pipeline_stats, versions_json, containers_config):
assembler_process = line.split(':')[1].replace('{', '').strip()
container = next(f).split('=')[1].replace('"', "").strip()
containers[assembler_process] = container
print(containers)

# Parse performance data
performance = {}
with open(pipeline_stats, "r") as pipeline_stats_file:
csvreader = csv.reader(pipeline_stats_file, delimiter='\t')
next(csvreader) # skip header
for row in csvreader:
row[2] = row[2].split(':')[1]
if row[2] in utils.ASSEMBLER_PROCESS_LIST:
if row[2] not in performance.keys():
performance[row[2]] = {"cpus": [_cpu_load_parser(row[8], row[15], row[13])],
Expand All @@ -233,11 +237,13 @@ def process_performance_data(pipeline_stats, versions_json, containers_config):
_size_coverter(row[19]))
performance[row[2]]["wchar"].append(
_size_coverter(row[20]))
print(performance)

performance_metadata = []

id_int = 1
for process_id in performance.keys():
print(process_id)

# time
time_array = performance[process_id]["realtime"]
mean_time = round(sum(time_array) / len(time_array), 1)
Expand All @@ -260,8 +266,18 @@ def process_performance_data(pipeline_stats, versions_json, containers_config):
sum(performance[process_id]["wchar"]) / len(performance[process_id]["wchar"]))
wchar_str = _size_compress(avg_wchar)

performance_metadata.append({"id": id_int, "assembler": process_id, "version": assembler_versions[process_id],
"container": containers[process_id], "avgTime": mean_time_str, "cpus": cpu_hour,
try:
assembler_version = assembler_versions[process_id]
except KeyError:
assembler_version = ''

try:
container = containers[process_id]
except KeyError:
container = ''

performance_metadata.append({"id": id_int, "assembler": process_id, "version": assembler_version,
"container": container, "avgTime": mean_time_str, "cpus": cpu_hour,
"max_rss": rss_str, "avgRead": rchar_str, "avgWrite": wchar_str})
id_int += 1

Expand Down