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DOC: scan area detector with motor(s) #108

DOC: scan area detector with motor(s)

DOC: scan area detector with motor(s) #108

Workflow file for this run

name: CI
on:
# Triggers the workflow on push or pull request events but only for the main branch
push:
branches:
- main
pull_request:
branches:
- main
workflow_dispatch: # allow manual triggering
defaults:
run:
shell: bash -l {0}
jobs:
lint:
name: Linting & Code style
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Install package
run: |
set -vxeuo pipefail
python -m pip install --upgrade pip
- name: Run ruff
uses: davidslusser/actions_python_ruff@v1.0.1
with:
python_version: "3.11"
tests:
name: CI py${{ matrix.python-version }}
runs-on: ubuntu-latest
needs: lint
strategy:
matrix:
python-version:
- "3.9"
- "3.10"
- "3.11"
# - "3.12" # 2023-Q4 wait for upstreams to be ready
max-parallel: 5
steps:
- name: Set time zone
run: echo "TZ=America/Chicago" >> "$GITHUB_ENV"
- name: Checkout the project from GitHub
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Diagnostics
run: |
echo $(pwd)
ls -lAFgh ./
echo "------------------"
ls -lAFgh "$(pwd)/bluesky/"
grep primary bluesky/user_group_permissions.yaml
- name: Create Python ${{ matrix.python-version }} environment
uses: mamba-org/setup-micromamba@v1
with:
cache-environment: true
cache-environment-key: env-key-${{ matrix.python-version }}
# channel-priority: flexible
environment-file: environment.yml
environment-name: anaconda-test-env-py-${{ matrix.python-version }}
create-args: >-
coveralls
pytest
pytest-cov
python=${{ matrix.python-version }}
setuptools-scm
- name: Initial Diagnostics
run: |
micromamba env list
micromamba info
micromamba list
conda config --show-sources
conda config --show
printenv | sort
- name: Directories before Docker
run: ls -lAFghrt ~/
- name: Start EPICS IOCs in Docker
run: |
bash ./.github/scripts/iocmgr.sh start GP gp
bash ./.github/scripts/iocmgr.sh start ADSIM ad
docker ps -a
ls -lAFgh /tmp/docker_ioc/iocad/
ls -lAFgh /tmp/docker_ioc/iocgp/
- name: Directories after Docker
run: ls -lAFghrt ~/
- name: Confirm EPICS is available with caget
run: |
which caget
caget gp:UPTIME
caget ad:cam1:Acquire_RBV
- name: Confirm EPICS IOC is available via PyEpics
run: |
which python
python -c "import epics; print(epics.caget('gp:UPTIME'))"
- name: Confirm EPICS IOC is available via ophyd
run: |
CMD="import ophyd"
CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')"
CMD+="; up.wait_for_connection()"
CMD+="; print(up.get())"
python -c "${CMD}"
- name: Install Redis & screen
run: |
sudo apt-get install redis screen
- name: Run Bluesky queueserver
run: |
set -vxeuo pipefail
conda env list
pushd ./bluesky/
bash ./qserver.sh run &
# bash ./qserver.sh start
sleep 10
bash ./qserver.sh status
qserver status
popd
- name: Run tests with pytest & coverage
run: |
set -vxeuo pipefail
coverage run --concurrency=thread --parallel-mode -m pytest -vvv .
coverage combine
python -m coverage report --precision 3
- name: Force Install coveralls by pip
shell: bash -l {0}
run: |
python -m pip install --force-reinstall coveralls
- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
set -vxeuo pipefail
python -m coveralls debug
python -m coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true
# https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support
coveralls:
name: Report unit test coverage to coveralls
needs: tests
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Gather coverage and report to Coveralls
run: |
set -vxeuo pipefail
echo "Finally!"
pip3 install --upgrade coveralls
# debug mode: output prepared json and reported files list to stdout
# https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html
coveralls debug
coveralls --service=github --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}