DOC: scan area detector with motor(s) (#311) #121
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name: CI | |
on: | |
# Triggers the workflow on push or pull request events but only for the main branch | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: # allow manual triggering | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
lint: | |
name: Linting & Code style | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install package | |
run: | | |
set -vxeuo pipefail | |
python -m pip install --upgrade pip | |
- name: Run ruff | |
uses: davidslusser/actions_python_ruff@v1.0.1 | |
with: | |
python_version: "3.11" | |
tests: | |
name: CI py${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
needs: lint | |
strategy: | |
matrix: | |
python-version: | |
- "3.9" | |
- "3.10" | |
- "3.11" | |
# - "3.12" # 2023-Q4 wait for upstreams to be ready | |
max-parallel: 5 | |
steps: | |
- name: Set time zone | |
run: echo "TZ=America/Chicago" >> "$GITHUB_ENV" | |
- name: Checkout the project from GitHub | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Diagnostics | |
run: | | |
echo $(pwd) | |
ls -lAFgh ./ | |
echo "------------------" | |
ls -lAFgh "$(pwd)/bluesky/" | |
grep primary bluesky/user_group_permissions.yaml | |
- name: Create Python ${{ matrix.python-version }} environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
cache-environment: true | |
cache-environment-key: env-key-${{ matrix.python-version }} | |
# channel-priority: flexible | |
environment-file: environment.yml | |
environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
create-args: >- | |
coveralls | |
pytest | |
pytest-cov | |
python=${{ matrix.python-version }} | |
setuptools-scm | |
- name: Initial Diagnostics | |
run: | | |
micromamba env list | |
micromamba info | |
micromamba list | |
conda config --show-sources | |
conda config --show | |
printenv | sort | |
- name: Directories before Docker | |
run: ls -lAFghrt ~/ | |
- name: Start EPICS IOCs in Docker | |
run: | | |
bash ./.github/scripts/iocmgr.sh start GP gp | |
bash ./.github/scripts/iocmgr.sh start ADSIM ad | |
docker ps -a | |
ls -lAFgh /tmp/docker_ioc/iocad/ | |
ls -lAFgh /tmp/docker_ioc/iocgp/ | |
- name: Directories after Docker | |
run: ls -lAFghrt ~/ | |
- name: Confirm EPICS is available with caget | |
run: | | |
which caget | |
caget gp:UPTIME | |
caget ad:cam1:Acquire_RBV | |
- name: Confirm EPICS IOC is available via PyEpics | |
run: | | |
which python | |
python -c "import epics; print(epics.caget('gp:UPTIME'))" | |
- name: Confirm EPICS IOC is available via ophyd | |
run: | | |
CMD="import ophyd" | |
CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | |
CMD+="; up.wait_for_connection()" | |
CMD+="; print(up.get())" | |
python -c "${CMD}" | |
- name: Install Redis & screen | |
run: | | |
sudo apt-get install redis screen | |
- name: Run Bluesky queueserver | |
run: | | |
set -vxeuo pipefail | |
conda env list | |
pushd ./bluesky/ | |
bash ./qserver.sh run & | |
# bash ./qserver.sh start | |
sleep 10 | |
bash ./qserver.sh status | |
qserver status | |
popd | |
- name: Run tests with pytest & coverage | |
run: | | |
set -vxeuo pipefail | |
coverage run --concurrency=thread --parallel-mode -m pytest -vvv . | |
coverage combine | |
python -m coverage report --precision 3 | |
- name: Force Install coveralls by pip | |
shell: bash -l {0} | |
run: | | |
python -m pip install --force-reinstall coveralls | |
- name: Upload coverage data to coveralls.io | |
shell: bash -l {0} | |
run: | | |
set -vxeuo pipefail | |
python -m coveralls debug | |
python -m coveralls --service=github | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
COVERALLS_PARALLEL: true | |
# https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
coveralls: | |
name: Report unit test coverage to coveralls | |
needs: tests | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Gather coverage and report to Coveralls | |
run: | | |
set -vxeuo pipefail | |
echo "Finally!" | |
pip3 install --upgrade coveralls | |
# debug mode: output prepared json and reported files list to stdout | |
# https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
coveralls debug | |
coveralls --service=github --finish | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |