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Hotfix for ADAM/BAM output issue. #89

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merged 1 commit into from
Feb 26, 2016
Merged

Hotfix for ADAM/BAM output issue. #89

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2 changes: 1 addition & 1 deletion adam/Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ runtime_fullpath = $(realpath ${runtime_path})
build_tool = runtime-container.DONE
build_number ?= none
git_commit ?= $(shell git rev-parse HEAD)
nametag = quay.io/ucsc_cgl/adam:cd6ef41
nametag = quay.io/ucsc_cgl/adam:962-ehf

# Steps
build: ${build_output} ${build_tool}
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5 changes: 3 additions & 2 deletions adam/build/Dockerfile
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Expand Up @@ -5,9 +5,10 @@ MAINTAINER Frank Austin Nothaft, fnothaft@berkeley.edu
WORKDIR /home

# clone adam
RUN git clone https://github.com/bigdatagenomics/adam.git
RUN git clone https://github.com/fnothaft/adam.git

# build adam
WORKDIR /home/adam
RUN git checkout cd6ef4162ae97460059ef067d21bbed7e060b289
RUN git checkout 962-ehf

RUN /opt/apache-maven-3.3.3/bin/mvn package -DskipTests