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BDM-Lab

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  1. LorDG LorDG Public

    3D genome reconstruction with Lorentzian objective function

    Java 9 1

  2. MOGEN MOGEN Public

    The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data

    Java 8 3

  3. 3DMax 3DMax Public

    A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data

    Java 8 5

  4. Hierarchical3DGenome Hierarchical3DGenome Public

    A hierarchical algorithm for building high-resolution 3D genome structures

    5 3

  5. ClusterTAD ClusterTAD Public

    A clustering method for identifying topologically associated domains (TADs) from Hi-C data

    MATLAB 4 2

  6. GSDB GSDB Public

    The scripts, web pages, and documents of the genome structure database (GSDB)

    JavaScript 3 4

Repositories

Showing 6 of 6 repositories
  • GSDB Public

    The scripts, web pages, and documents of the genome structure database (GSDB)

    BDM-Lab/GSDB’s past year of commit activity
    JavaScript 3 4 0 0 Updated Mar 9, 2023
  • Hierarchical3DGenome Public

    A hierarchical algorithm for building high-resolution 3D genome structures

    BDM-Lab/Hierarchical3DGenome’s past year of commit activity
    5 3 4 0 Updated Mar 9, 2023
  • LorDG Public

    3D genome reconstruction with Lorentzian objective function

    BDM-Lab/LorDG’s past year of commit activity
    Java 9 1 1 0 Updated Nov 16, 2019
  • ClusterTAD Public

    A clustering method for identifying topologically associated domains (TADs) from Hi-C data

    BDM-Lab/ClusterTAD’s past year of commit activity
    MATLAB 4 2 1 0 Updated Dec 14, 2018
  • 3DMax Public

    A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data

    BDM-Lab/3DMax’s past year of commit activity
    Java 8 5 1 0 Updated Mar 1, 2018
  • MOGEN Public

    The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data

    BDM-Lab/MOGEN’s past year of commit activity
    Java 8 GPL-3.0 3 2 0 Updated Feb 9, 2018

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