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grab-fasta and grab-seq

  • grab-fasta is use to extract a subset of the sequences of a FASTA file into another file.
  • grab-seq scans one or many FASTA target files, and extract all regions that matches exactly a query sequence, with optionally flanking regions too.

This package is based on activities of the OGMP (i.e, prior to 2002), and becomes open source as part of MFannot.

Install

  • To install grab-fasta you just need to copy the grab-fasta file in one of your executable directories (e.g: a directory list in $PATH).
  • To install grab-seq you just need to copy the grab-seq file in one of your executable directories (e.g: a directory list in $PATH).

Note: At this point the installation of grab-fasta was only tested on Unix system (Ubuntu and CentOS).

Usage

  • In order to get the help page of grab-fasta you need to type grab-fasta -h in your terminal.
  • In order to get the help page of grab-fasta you need to type grab-seq -h in your terminal.

Contributing

Please see CONTRIBUTING and CONDUCT for details.

Credits

License

GNU General Public License v3.0. Please see License File for more information.