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Publications
David Campos edited this page Oct 12, 2016
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Neji and its components have been actively evaluated and validated in international publications.
- David Campos. Mining biomedical information from scientific literature. PhD Thesis, Universidade de Aveiro, February 2014
- David Campos, Sérgio Matos, José Luís Oliveira. Current methodologies for biomedical Named Entity Recognition. Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data, Mourad Elloumi and Albert Y. Zomaya (Ed.), Wiley, p. 1390, January 2014
- David Campos, Sérgio Matos, José Luís Oliveira. Biomedical Named Entity Recognition: A Survey of Machine-Learning Tools. Theory and Applications for Advanced Text Mining, Shigeaki Sakurai (Ed.), InTech, p. 175-195, November 2012
- David Campos, Sérgio Matos, José Luís Oliveira. A document processing pipeline for annotating chemical entities in scientific documents. Journal of Cheminformatics, vol. 7, no. Suppl. 1, p. S7, January 2015 [IF 2014: 4.547 (Q1, 4/139)]
- Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M Lowe, Roger A Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, SV Ramanan, Senthil Nathan, Slavko Žitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A Akhondi, Jan A Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C Lee Giles, Hongfang Liu, Komandur Elayavilli Ravikumar, Andre Lamurias, Francisco M Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usié, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia. The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics, vol. 7, no. Suppl 1, p. S2, January 2015 [IF 2014: 4.547 (Q1, 4/139)]
- David Campos, Sérgio Matos, José Luís Oliveira. A modular framework for biomedical concept recognition. BMC Bioinformatics, vol. 14, no. 281, September 2013 [IF 2013: 2.672 (Q1, 8/52)] [IF 2014: 2.576 (Q1, 11/57)]
- Tiago Nunes, David Campos, Sérgio Matos, José Luís Oliveira. BeCAS: biomedical concept recognition services and visualization. Bioinformatics, vol. 29, no. 15, p. 1915-1916, June 2013 [IF 2013: 4.621 (Q1, 4/52)] [IF 2014: 4.981 (Q1, 3/57)]
- David Campos, Sérgio Matos, José Luís Oliveira. Gimli: open source and high-performance biomedical name recognition. BMC Bioinformatics, vol. 14, no. 1, p. 54, February 2013 [IF 2013: 2.672 (Q1, 8/52)] [IF 2014: 2.576 (Q1, 11/57)]
- David Campos, Quoc-Chinh Bui, Sérgio Matos, José Luís Oliveira. TrigNER: automatically optimized biomedical event trigger recognition on scientific documents. Source Code for Biology and Medicine, vol. 9, no. 1, January 2014
- André Santos, Sérgio Matos, David Campos, José Luís Oliveira. A Curation Pipeline and Web-Services for PDF Documents. Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, Potsdam, Germany, August 2016
- Sérgio Matos, José Sequeira, David Campos, José Luís Oliveira. Identification of chemical and gene mentions in patent texts using feature-rich conditional random fields. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, Sevilla, Spain, p. 76-81, September 2015
- Sérgio Matos, André Santos, David Campos, José Luís Oliveira. Neji: a BioC compatible framework for biomedical concept recognition. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, Sevilla, Spain, p. 17-21, September 2015
- David Campos, Sérgio Matos, José Luís Oliveira. Chemical name recognition with harmonized feature-rich conditional random fields. Fourth BioCreative Challenge Evaluation Workshop, vol. 2, p. 82-87, October 2013
- David Campos, Sérgio Matos, José Luís Oliveira. Neji: a tool for heterogeneous biomedical concept identification. Proceedings of the BioLINK SIG, ISMB/ECCB, Berlin, Germany, p. 28-31, July 2013
- David Campos, Sérgio Matos, José Luís Oliveira. Recognition of Gene/Protein names using Conditional Random Fields. Proceedings of the International Conference on Knowledge Discovery and Information Retrieval 2010 (KDIR2010), Valencia, Spain, October 2010