This was the original BioScholar web application, described in
Russ et al. 2011.
Note: This system was built for Java 1.6 with ant. Set JAVA_HOME to a local Java 1.6 distribution to compile and build full application by running performing the following:
Set JAVA_HOME to 1.6
$ /usr/libexec/java_home -v 1.6
$ export JAVA_HOME=<output-of-above-command>
Note that you may also need to delete the ./server/bin directory to remove old versions of the KefedJettyServer class if you get Exception in thread "main" java.lang.UnsupportedClassVersionError: edu/isi/bmkeg/kefed/server/KefedJettyServer : Unsupported major.minor version 52.0 errors.
Build the system
$ cd editor
$ ant
$ cp dist/blazeds.war ../server/webapps
$ cd ../server
$ ant
Running the system
You will need to install and run ElasticSearch to store the KEfED models. Once installed, make sure that the system has an index called kefed. This will be where we store all our models and data.
curl -XPUT 'localhost:9200/kefed?pretty&pretty'
curl -XGET 'localhost:9200/_cat/indices?v&pretty'