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BenAawf · Oct 5, 2020 · 5e933f0 · 5e933f0
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diff --git a/scripts/Annotation2GeneGO/Annotation2GeneGO.py b/scripts/Annotation2GeneGO/Annotation2GeneGO.py
diff --git a/scripts/Bnapus_GO/Bnapus_GeneGO.md b/scripts/Bnapus_GO/Bnapus_GeneGO.md
diff --git a/scripts/Bnapus_GO/createBnapusGOdb.py b/scripts/Bnapus_GO/createBnapusGOdb.py
diff --git a/scripts/Bnapus_GO/data/Brassica_napus.annotation_v5.gff3 b/scripts/Bnapus_GO/data/Brassica_napus.annotation_v5.gff3
diff --git a/scripts/Bnapus_GO/data/Brassica_napus_GO b/scripts/Bnapus_GO/data/Brassica_napus_GO
diff --git a/scripts/Bnapus_GO/data/term.txt b/scripts/Bnapus_GO/data/term.txt
diff --git a/scripts/ChangeSampleName/ChangeSampleName.py b/scripts/ChangeSampleName/ChangeSampleName.py
diff --git a/scripts/ChangeSampleName/test/LSS0-ZW-4.R1.fq.gz b/scripts/ChangeSampleName/test/LSS0-ZW-4.R1.fq.gz
diff --git a/scripts/ChangeSampleName/test/LSS3-CR-3.R1.fq.gz b/scripts/ChangeSampleName/test/LSS3-CR-3.R1.fq.gz
diff --git a/scripts/ChrVariationDistribution/ChrVariationDistribution.py b/scripts/ChrVariationDistribution/ChrVariationDistribution.py
diff --git a/scripts/ChrVariationDistribution/Track1_snp_distribution.txt b/scripts/ChrVariationDistribution/Track1_snp_distribution.txt
diff --git a/scripts/ChrVariationDistribution/Track1_snp_test.txt b/scripts/ChrVariationDistribution/Track1_snp_test.txt
diff --git a/scripts/CombineDirFasta/CombineDirFasta.py b/scripts/CombineDirFasta/CombineDirFasta.py
diff --git a/scripts/CommonSpecificRegions/CommonSpecificRegions.py b/scripts/CommonSpecificRegions/CommonSpecificRegions.py
diff --git a/scripts/CommonSpecificRegions/KY131___WCY58_snp_index_number_win_sliding_sig_cont.xls b/scripts/CommonSpecificRegions/KY131___WCY58_snp_index_number_win_sliding_sig_cont.xls
diff --git a/scripts/CommonSpecificRegions/WCY1___WCY58_snp_index_number_win_sliding_sig_cont.xls b/scripts/CommonSpecificRegions/WCY1___WCY58_snp_index_number_win_sliding_sig_cont.xls
diff --git a/scripts/DownloadGenomes.py b/scripts/DownloadGenomes.py
diff --git a/scripts/FastxSeqLen/HistPlot.R b/scripts/FastxSeqLen/HistPlot.R
diff --git a/scripts/FastxSeqLen/SeqLensDistribute.py b/scripts/FastxSeqLen/SeqLensDistribute.py
diff --git a/scripts/GetTargetRecord/GetTargetRecord.py b/scripts/GetTargetRecord/GetTargetRecord.py
diff --git a/scripts/GetTargetRecord/gene b/scripts/GetTargetRecord/gene
diff --git a/scripts/GetTargetRecord/gene_coverage_test.txt b/scripts/GetTargetRecord/gene_coverage_test.txt
diff --git a/scripts/OTUCategoryRatio/CategoryRatio.py b/scripts/OTUCategoryRatio/CategoryRatio.py
diff --git a/scripts/OTUCategoryRatio/otu_table.txt b/scripts/OTUCategoryRatio/otu_table.txt
diff --git a/scripts/OTUCategoryRatio/otu_table_category.txt b/scripts/OTUCategoryRatio/otu_table_category.txt
diff --git a/scripts/Phylogenetic/Acinetobacter.fasta b/scripts/Phylogenetic/Acinetobacter.fasta
diff --git a/scripts/Phylogenetic/Acinetobacter.mega.meg b/scripts/Phylogenetic/Acinetobacter.mega.meg
diff --git a/scripts/Phylogenetic/Acinetobacter_nei_join.tree.mtsx b/scripts/Phylogenetic/Acinetobacter_nei_join.tree.mtsx
diff --git a/scripts/Phylogenetic/Acinetobacter_nei_join.tree.tif b/scripts/Phylogenetic/Acinetobacter_nei_join.tree.tif
diff --git a/scripts/Phylogenetic/ExtractSpeciesSeq.py b/scripts/Phylogenetic/ExtractSpeciesSeq.py
diff --git a/scripts/Phylogenetic/README.txt b/scripts/Phylogenetic/README.txt
diff --git a/scripts/Primer3Result/C100_primer_report.html b/scripts/Primer3Result/C100_primer_report.html
diff --git a/scripts/Primer3Result/C100_primer_report.xls b/scripts/Primer3Result/C100_primer_report.xls
diff --git a/scripts/Primer3Result/Primer3Result.py b/scripts/Primer3Result/Primer3Result.py
diff --git a/scripts/RDA/RDACorModify.R b/scripts/RDA/RDACorModify.R
diff --git a/scripts/RDA/Samples_taxonomy_species_test.txt b/scripts/RDA/Samples_taxonomy_species_test.txt
diff --git a/scripts/RDA/sample_factors_test.txt b/scripts/RDA/sample_factors_test.txt
diff --git a/scripts/Scatter_plot.R b/scripts/Scatter_plot.R
diff --git a/scripts/SeqCountLogo/SeqCountLogo.py b/scripts/SeqCountLogo/SeqCountLogo.py
diff --git a/scripts/SeqCountLogo/seq_logo.png b/scripts/SeqCountLogo/seq_logo.png
diff --git a/scripts/SplitGenome2Chrs/SplitGenome2Chrs.py b/scripts/SplitGenome2Chrs/SplitGenome2Chrs.py
diff --git a/scripts/SubSample.py b/scripts/SubSample.py
diff --git a/scripts/TargetColumns/TargetColumns.py b/scripts/TargetColumns/TargetColumns.py
diff --git a/scripts/TargetColumns/test b/scripts/TargetColumns/test
diff --git a/scripts/TargetTaxaGenes/TargetTaxaGenes.py b/scripts/TargetTaxaGenes/TargetTaxaGenes.py
diff --git a/scripts/TargetTaxaGenes/representive.faa.annotation_test.xls b/scripts/TargetTaxaGenes/representive.faa.annotation_test.xls
diff --git a/scripts/TargetTaxaGenes/representive.faa.diamond_taxonomy_species_test.txt b/scripts/TargetTaxaGenes/representive.faa.diamond_taxonomy_species_test.txt
diff --git a/scripts/combineDirfiles/CombineDirFiles.py b/scripts/combineDirfiles/CombineDirFiles.py
diff --git a/scripts/combineDirfiles/DirfastqStats.py b/scripts/combineDirfiles/DirfastqStats.py
diff --git a/scripts/flowerVenn/C186_group_special_OTUs.xls b/scripts/flowerVenn/C186_group_special_OTUs.xls
diff --git a/scripts/flowerVenn/flowerVennPlot.R b/scripts/flowerVenn/flowerVennPlot.R
diff --git a/scripts/freeNode.py b/scripts/freeNode.py
diff --git a/scripts/genus2taxonomy/genus2taxonomy.py b/scripts/genus2taxonomy/genus2taxonomy.py
diff --git a/scripts/genus2taxonomy/genus2taxonomyParallel.py b/scripts/genus2taxonomy/genus2taxonomyParallel.py
diff --git a/scripts/genus2taxonomy/representive.faa.diamond_taxonomy_test.txt b/scripts/genus2taxonomy/representive.faa.diamond_taxonomy_test.txt
diff --git a/scripts/genus2taxonomy/taxonomy2DB.py b/scripts/genus2taxonomy/taxonomy2DB.py
diff --git a/scripts/get_top_kegg.py b/scripts/get_top_kegg.py
diff --git a/scripts/gtf2bed/gtf2bed_longest.py b/scripts/gtf2bed/gtf2bed_longest.py
diff --git a/scripts/gtf2bed/sample.bed b/scripts/gtf2bed/sample.bed
diff --git a/scripts/gtf2bed/sample.gtf b/scripts/gtf2bed/sample.gtf
diff --git a/scripts/other/GO_3Catgory_plot.r b/scripts/other/GO_3Catgory_plot.r
diff --git a/scripts/other/VariantBarplot/VariantBarplot.R b/scripts/other/VariantBarplot/VariantBarplot.R
diff --git a/scripts/other/VariantBarplot/wheat_snp.txt b/scripts/other/VariantBarplot/wheat_snp.txt
diff --git a/scripts/other/linkage/chip_geno_filter_AB_v0.1.pl b/scripts/other/linkage/chip_geno_filter_AB_v0.1.pl
diff --git a/scripts/other/linkage/linkage_sort_v0.1.pl b/scripts/other/linkage/linkage_sort_v0.1.pl
diff --git a/scripts/unipritSeqDB/unipritSeqDB.py b/scripts/unipritSeqDB/unipritSeqDB.py
diff --git a/scripts/unipritSeqDB/uniprot-carbon+cycle_test.fasta b/scripts/unipritSeqDB/uniprot-carbon+cycle_test.fasta
diff --git a/scripts/unipritSeqDB/uniprot-carbon_test.db b/scripts/unipritSeqDB/uniprot-carbon_test.db
diff --git a/scripts/unipritSeqDB/uniprot-carbon_test_out.txt b/scripts/unipritSeqDB/uniprot-carbon_test_out.txt
diff --git a/scripts/vennCategory/commonDown.svg b/scripts/vennCategory/commonDown.svg
diff --git a/scripts/vennCategory/vennPlot.R b/scripts/vennCategory/vennPlot.R