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For submission to CJFAS
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Updated code for CJFAS
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@celarson
celarson committed Jun 17, 2022
1 parent b57a247 commit b613bec
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Showing 127 changed files with 3,720 additions and 3,298 deletions.
97 changes: 0 additions & 97 deletions ALLInputCors.csv
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25 changes: 25 additions & 0 deletions AqCWDCor.csv
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"","No_logs_per_length","No_logs_per_area","VolCWD_per_length","VolCWD_per_area","No_logjams_per_length","No_logjams_per_area","No_logjam_pieces_per_length","No_logjam_pieces_per_area","VolCWDLJ_per_length","VolCWDLJ_per_area","prop_logjam_pieces","prop_logjam_vol","No_insitu_per_length","No_insitu_per_area","Vol_insitu_per_length","Vol_insitu_per_area","prop_insitu_pieces","prop_insitu_vol","No_ash_per_length","No_ash_per_area","Vol_ash_per_length","Vol_ash_per_area","prop_ash_pieces","prop_ash_vol"
"No_logs_per_length",1,0.716508754789323,0.812022836934325,0.851413469224602,0.172735957991008,0.18710885400385,-0.443260548336168,-0.519732719483917,-0.349031855914114,-0.445909779411586,-0.686902085591065,-0.477952128279075,0.292477785330867,0.173623945957071,0.442623676212625,0.326732648191816,0.076960034540035,0.0719346124741658,0.749203502427414,0.570285457030412,0.64873295858762,0.73592598049139,0.364337415573123,0.300495873081722
"No_logs_per_area",0.716508754789323,1,0.402325694078048,0.756249659516831,-0.306127525241953,-0.0760321131365848,-0.773857017215649,-0.603881278879149,-0.86913104973117,-0.891200209535591,-0.82296372271619,-0.728370141717146,0.704537628501734,0.690905685298687,0.665039407431683,0.744106438668196,0.542542936933595,0.512208288489609,0.725884215543224,0.832535500003489,0.282830258535561,0.547850670406512,0.435777561545297,0.0469081368614727
"VolCWD_per_length",0.812022836934325,0.402325694078048,1,0.888566787050794,-0.0654081218357606,-0.243377669428397,-0.477488232996001,-0.625772296462313,-0.16936497318425,-0.337487430451327,-0.608161403886576,-0.592752891179837,-0.00561498337478822,-0.0823307297053965,0.436031870163846,0.223254597503006,-0.160462999134578,-0.0472620366448791,0.772446835886296,0.475536922357759,0.900460608077901,0.875698666667202,0.509241343944949,0.533024253983824
"VolCWD_per_area",0.851413469224602,0.756249659516831,0.888566787050794,1,-0.324540677522453,-0.343695444969052,-0.76991154046856,-0.769367891672252,-0.589421109823847,-0.719877637930333,-0.834365119001139,-0.836713793381383,0.346571210276934,0.30413147414081,0.683252135890843,0.570789073452413,0.177555038983294,0.267742239609262,0.910072869350003,0.766809881620548,0.791610086201624,0.906285825316272,0.619201024789285,0.430211244612736
"No_logjams_per_length",0.172735957991008,-0.306127525241953,-0.0654081218357606,-0.324540677522453,1,0.925171811271726,0.616774143192147,0.337519157160175,0.692625866515052,0.6614965033775,0.267915339007589,0.666495163412105,-0.20332662548618,-0.328040483090996,-0.493749602010445,-0.518932572976611,-0.24730347804187,-0.395594387299611,-0.271250668764037,-0.400593354632841,-0.185374905186407,-0.30389832015278,-0.322132701420125,-0.0767296585941843
"No_logjams_per_area",0.18710885400385,-0.0760321131365848,-0.243377669428397,-0.343695444969052,0.925171811271726,1,0.541128216891498,0.38538295192323,0.437302365253712,0.473486321083344,0.213779661023747,0.636487101171606,0.0130627755165765,-0.102219527413153,-0.424183119312272,-0.367335776081781,-0.0479227721252386,-0.244839759598015,-0.292673453439329,-0.298548492822062,-0.372753135994034,-0.394910272614516,-0.392841596790862,-0.257771236919862
"No_logjam_pieces_per_length",-0.443260548336168,-0.773857017215649,-0.477488232996001,-0.76991154046856,0.616774143192147,0.541128216891498,1,0.899027927136812,0.801438830885932,0.937130744082765,0.916021498852677,0.980791109675321,-0.649337862977172,-0.720557665776538,-0.781421822536293,-0.861855767560391,-0.577029832857978,-0.642336080183899,-0.836873894495903,-0.928870687634675,-0.416133194715618,-0.638144397060923,-0.765074240667628,-0.280032392360191
"No_logjam_pieces_per_area",-0.519732719483917,-0.603881278879149,-0.625772296462313,-0.769367891672252,0.337519157160175,0.38538295192323,0.899027927136812,1,0.48098819730766,0.711221066090333,0.941831189664127,0.885018196890259,-0.626127782546986,-0.640641751919703,-0.796052681734674,-0.801370075513324,-0.562302241903797,-0.637290789050023,-0.9310239057309,-0.914774233385248,-0.598554631890057,-0.746813970720535,-0.93147184579603,-0.569638624884442
"VolCWDLJ_per_length",-0.349031855914114,-0.86913104973117,-0.16936497318425,-0.589421109823847,0.692625866515052,0.437302365253712,0.801438830885932,0.48098819730766,1,0.957904026786121,0.644076163668385,0.7717426879729,-0.586288818141954,-0.661769540449973,-0.598999591319269,-0.728139316064893,-0.495005621490298,-0.509221356326324,-0.519014681261604,-0.717048823539792,-0.101491368868155,-0.371031298375635,-0.321992621858932,0.127792551614869
"VolCWDLJ_per_area",-0.445909779411586,-0.891200209535591,-0.337487430451327,-0.719877637930333,0.6614965033775,0.473486321083344,0.937130744082765,0.711221066090333,0.957904026786121,1,0.823645512032841,0.907744006380884,-0.664781457615937,-0.734661985142548,-0.723909729688866,-0.835685931598012,-0.570303751093516,-0.603266823046282,-0.713029595237221,-0.868080370075409,-0.263457109829986,-0.528171342749784,-0.55334829960072,-0.064442910788283
"prop_logjam_pieces",-0.686902085591065,-0.82296372271619,-0.608161403886576,-0.834365119001139,0.267915339007589,0.213779661023747,0.916021498852677,0.941831189664127,0.644076163668385,0.823645512032841,1,0.879670213867264,-0.716637356588782,-0.716181879444928,-0.782435125401248,-0.827759753619793,-0.597767340027607,-0.619719619987234,-0.940030341729469,-0.964120659377206,-0.51076524628144,-0.718639659507737,-0.81154326722416,-0.394531170512118
"prop_logjam_vol",-0.477952128279075,-0.728370141717146,-0.592752891179837,-0.836713793381383,0.666495163412105,0.636487101171606,0.980791109675321,0.885018196890259,0.7717426879729,0.907744006380884,0.879670213867264,1,-0.52338350777604,-0.587398164981082,-0.770819006002538,-0.794351250386072,-0.443238754444327,-0.543810305604869,-0.851733425856085,-0.881360504838201,-0.53997878839156,-0.724815212674283,-0.75010691299187,-0.333908776809212
"No_insitu_per_length",0.292477785330867,0.704537628501734,-0.00561498337478822,0.346571210276934,-0.20332662548618,0.0130627755165765,-0.649337862977172,-0.626127782546986,-0.586288818141954,-0.664781457615937,-0.716637356588782,-0.52338350777604,1,0.97244815033753,0.792997245416972,0.91420281353472,0.973244553847073,0.933957584187017,0.615731898420895,0.836993414301151,0.0947414509851884,0.351843515794984,0.676830587147239,0.332618937499633
"No_insitu_per_area",0.173623945957071,0.690905685298687,-0.0823307297053965,0.30413147414081,-0.328040483090996,-0.102219527413153,-0.720557665776538,-0.640641751919703,-0.661769540449973,-0.734661985142548,-0.716181879444928,-0.587398164981082,0.97244815033753,1,0.74079778263121,0.921315693439546,0.965254474564685,0.925126224075584,0.562705366194047,0.833535135580355,-0.0193528816478971,0.256018912464172,0.651624778010043,0.203485838766631
"Vol_insitu_per_length",0.442623676212625,0.665039407431683,0.436031870163846,0.683252135890843,-0.493749602010445,-0.424183119312272,-0.781421822536293,-0.796052681734674,-0.598999591319269,-0.723909729688866,-0.782435125401248,-0.770819006002538,0.792997245416972,0.74079778263121,1,0.932311583771178,0.750710061893864,0.854166489758318,0.859016058316769,0.899299900017904,0.622028623995089,0.795932141556063,0.877598114125744,0.698317268929514
"Vol_insitu_per_area",0.326732648191816,0.744106438668196,0.223254597503006,0.570789073452413,-0.518932572976611,-0.367335776081781,-0.861855767560391,-0.801370075513324,-0.728139316064893,-0.835685931598012,-0.827759753619793,-0.794351250386072,0.91420281353472,0.921315693439546,0.932311583771178,1,0.885616596835214,0.930816940143422,0.7788954709774,0.945274239101474,0.335728975633492,0.580316563769293,0.824755594351867,0.452353439818136
"prop_insitu_pieces",0.076960034540035,0.542542936933595,-0.160462999134578,0.177555038983294,-0.24730347804187,-0.0479227721252386,-0.577029832857978,-0.562302241903797,-0.495005621490298,-0.570303751093516,-0.597767340027607,-0.443238754444327,0.973244553847073,0.965254474564685,0.750710061893864,0.885616596835214,1,0.971688637960625,0.496522553169741,0.750417526898508,-0.000667563805554194,0.235267356245162,0.66703168131245,0.344254823243593
"prop_insitu_vol",0.0719346124741658,0.512208288489609,-0.0472620366448791,0.267742239609262,-0.395594387299611,-0.244839759598015,-0.642336080183899,-0.637290789050023,-0.509221356326324,-0.603266823046282,-0.619719619987234,-0.543810305604869,0.933957584187017,0.925126224075584,0.854166489758318,0.930816940143422,0.971688637960625,1,0.578178895000968,0.788353624438256,0.167882613741239,0.379918320420777,0.771164698598151,0.494691875210836
"No_ash_per_length",0.749203502427414,0.725884215543224,0.772446835886296,0.910072869350003,-0.271250668764037,-0.292673453439329,-0.836873894495903,-0.9310239057309,-0.519014681261604,-0.713029595237221,-0.940030341729469,-0.851733425856085,0.615731898420895,0.562705366194047,0.859016058316769,0.7788954709774,0.496522553169741,0.578178895000968,1,0.917198524787743,0.76605370741455,0.907395425393012,0.872286076762321,0.640347880751655
"No_ash_per_area",0.570285457030412,0.832535500003489,0.475536922357759,0.766809881620548,-0.400593354632841,-0.298548492822062,-0.928870687634675,-0.914774233385248,-0.717048823539792,-0.868080370075409,-0.964120659377206,-0.881360504838201,0.836993414301151,0.833535135580355,0.899299900017904,0.945274239101474,0.750417526898508,0.788353624438256,0.917198524787743,1,0.477518466715725,0.70969305300878,0.853323855213216,0.454283339151256
"Vol_ash_per_length",0.64873295858762,0.282830258535561,0.900460608077901,0.791610086201624,-0.185374905186407,-0.372753135994034,-0.416133194715618,-0.598554631890057,-0.101491368868155,-0.263457109829986,-0.51076524628144,-0.53997878839156,0.0947414509851884,-0.0193528816478971,0.622028623995089,0.335728975633492,-0.000667563805554194,0.167882613741239,0.76605370741455,0.477518466715725,1,0.951766158309723,0.637912019827663,0.807924406831512
"Vol_ash_per_area",0.73592598049139,0.547850670406512,0.875698666667202,0.906285825316272,-0.30389832015278,-0.394910272614516,-0.638144397060923,-0.746813970720535,-0.371031298375635,-0.528171342749784,-0.718639659507737,-0.724815212674283,0.351843515794984,0.256018912464172,0.795932141556063,0.580316563769293,0.235267356245162,0.379918320420777,0.907395425393012,0.70969305300878,0.951766158309723,1,0.74835420737847,0.756561722801286
"prop_ash_pieces",0.364337415573123,0.435777561545297,0.509241343944949,0.619201024789285,-0.322132701420125,-0.392841596790862,-0.765074240667628,-0.93147184579603,-0.321992621858932,-0.55334829960072,-0.81154326722416,-0.75010691299187,0.676830587147239,0.651624778010043,0.877598114125744,0.824755594351867,0.66703168131245,0.771164698598151,0.872286076762321,0.853323855213216,0.637912019827663,0.74835420737847,1,0.785957539724606
"prop_ash_vol",0.300495873081722,0.0469081368614727,0.533024253983824,0.430211244612736,-0.0767296585941843,-0.257771236919862,-0.280032392360191,-0.569638624884442,0.127792551614869,-0.064442910788283,-0.394531170512118,-0.333908776809212,0.332618937499633,0.203485838766631,0.698317268929514,0.452353439818136,0.344254823243593,0.494691875210836,0.640347880751655,0.454283339151256,0.807924406831512,0.756561722801286,0.785957539724606,1
1 change: 1 addition & 0 deletions AqCWDSumCl.csv
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""
1 change: 1 addition & 0 deletions AqCWDSumGr.csv
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""
1 change: 1 addition & 0 deletions AqCWDSumKa.csv
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""
Binary file modified AquaticLitterGL.png
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24 changes: 0 additions & 24 deletions AquaticLitterGL.png.2020-08-09_10-33-45.log
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24 changes: 0 additions & 24 deletions AquaticLitterGL.png.2020-08-09_11-29-55.log
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24 changes: 0 additions & 24 deletions AquaticLitterGL.png.2020-08-10_07-27-10.log
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24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2021-05-20_14-44-26.log
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INFO [2021-05-20 14:44:26] $x
INFO [2021-05-20 14:44:26] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $category.names
INFO [2021-05-20 14:44:26] c("Upstream", "Gap", "Downstream")
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $filename
INFO [2021-05-20 14:44:26] [1] "AquaticLitterGL.png"
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $output
INFO [2021-05-20 14:44:26] [1] TRUE
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $fill
INFO [2021-05-20 14:44:26] Gap_location_col_vec
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $cat.cex
INFO [2021-05-20 14:44:26] [1] 1.5
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $cex
INFO [2021-05-20 14:44:26] [1] 1.5
INFO [2021-05-20 14:44:26]
INFO [2021-05-20 14:44:26] $scaled
INFO [2021-05-20 14:44:26] [1] FALSE
INFO [2021-05-20 14:44:26]
24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2021-11-01_10-35-51.log
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INFO [2021-11-01 10:35:51] $x
INFO [2021-11-01 10:35:51] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $category.names
INFO [2021-11-01 10:35:51] c("Upstream", "Gap", "Downstream")
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $filename
INFO [2021-11-01 10:35:51] [1] "AquaticLitterGL.png"
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $output
INFO [2021-11-01 10:35:51] [1] TRUE
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $fill
INFO [2021-11-01 10:35:51] Gap_location_col_vec
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $cat.cex
INFO [2021-11-01 10:35:51] [1] 1.5
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $cex
INFO [2021-11-01 10:35:51] [1] 1.5
INFO [2021-11-01 10:35:51]
INFO [2021-11-01 10:35:51] $scaled
INFO [2021-11-01 10:35:51] [1] FALSE
INFO [2021-11-01 10:35:51]
24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2022-06-07_14-15-13.log
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INFO [2022-06-07 14:15:13] $x
INFO [2022-06-07 14:15:13] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $category.names
INFO [2022-06-07 14:15:13] c("Upstream", "Gap", "Downstream")
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $filename
INFO [2022-06-07 14:15:13] [1] "AquaticLitterGL.png"
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $output
INFO [2022-06-07 14:15:13] [1] TRUE
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $fill
INFO [2022-06-07 14:15:13] Gap_location_col_vec
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $cat.cex
INFO [2022-06-07 14:15:13] [1] 1.5
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $cex
INFO [2022-06-07 14:15:13] [1] 1.5
INFO [2022-06-07 14:15:13]
INFO [2022-06-07 14:15:13] $scaled
INFO [2022-06-07 14:15:13] [1] FALSE
INFO [2022-06-07 14:15:13]
24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2022-06-13_15-48-17.log
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INFO [2022-06-13 15:48:17] $x
INFO [2022-06-13 15:48:17] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $category.names
INFO [2022-06-13 15:48:17] c("Upstream", "Gap", "Downstream")
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $filename
INFO [2022-06-13 15:48:17] [1] "AquaticLitterGL.png"
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $output
INFO [2022-06-13 15:48:17] [1] TRUE
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $fill
INFO [2022-06-13 15:48:17] Gap_location_col_vec
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $cat.cex
INFO [2022-06-13 15:48:17] [1] 1.5
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $cex
INFO [2022-06-13 15:48:17] [1] 1.5
INFO [2022-06-13 15:48:17]
INFO [2022-06-13 15:48:17] $scaled
INFO [2022-06-13 15:48:17] [1] FALSE
INFO [2022-06-13 15:48:17]
24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2022-06-14_16-01-28.log
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Original file line number Diff line number Diff line change
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INFO [2022-06-14 16:01:28] $x
INFO [2022-06-14 16:01:28] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $category.names
INFO [2022-06-14 16:01:28] c("Upstream", "Gap", "Downstream")
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $filename
INFO [2022-06-14 16:01:28] [1] "AquaticLitterGL.png"
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $output
INFO [2022-06-14 16:01:28] [1] TRUE
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $fill
INFO [2022-06-14 16:01:28] Gap_location_col_vec
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $cat.cex
INFO [2022-06-14 16:01:28] [1] 1.5
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $cex
INFO [2022-06-14 16:01:28] [1] 1.5
INFO [2022-06-14 16:01:28]
INFO [2022-06-14 16:01:28] $scaled
INFO [2022-06-14 16:01:28] [1] FALSE
INFO [2022-06-14 16:01:28]
24 changes: 24 additions & 0 deletions AquaticLitterGL.png.2022-06-15_11-42-41.log
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INFO [2022-06-15 11:42:41] $x
INFO [2022-06-15 11:42:41] list(USAquaticLeafLitter, GAquaticLeafLitter, DSAquaticLeafLitter)
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $category.names
INFO [2022-06-15 11:42:41] c("Upstream", "Gap", "Downstream")
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $filename
INFO [2022-06-15 11:42:41] [1] "AquaticLitterGL.png"
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $output
INFO [2022-06-15 11:42:41] [1] TRUE
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $fill
INFO [2022-06-15 11:42:41] Gap_location_col_vec
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $cat.cex
INFO [2022-06-15 11:42:41] [1] 1.5
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $cex
INFO [2022-06-15 11:42:41] [1] 1.5
INFO [2022-06-15 11:42:41]
INFO [2022-06-15 11:42:41] $scaled
INFO [2022-06-15 11:42:41] [1] FALSE
INFO [2022-06-15 11:42:41]
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