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Machine readable model property overview #169

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FFroehlich opened this issue Nov 22, 2022 · 2 comments · Fixed by #238
Closed

Machine readable model property overview #169

FFroehlich opened this issue Nov 22, 2022 · 2 comments · Fixed by #238
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@dweindl

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@FFroehlich
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Would be nice to have the table provided in README.md in some machine readable format like .csv or .tsv.
@dweindl
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dweindl commented Nov 22, 2022

Only requires saving this DataFrame as csv/tsv

Benchmark-Models-PEtab/scripts/overview.py

Line 113 in 11dfed1

df = get_overview_table()

@FFroehlich
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Only requires saving this DataFrame as csv/tsv

Benchmark-Models-PEtab/scripts/overview.py

Line 113 in 11dfed1

df = get_overview_table()

okay, maybe it makes sense to expose that function in the python package :)

@dilpath dilpath mentioned this issue Apr 18, 2024
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@dweindl dweindl self-assigned this Sep 26, 2024
dweindl added a commit that referenced this issue Sep 26, 2024
@dweindl
Closes #169
094dc81
@dweindl dweindl mentioned this issue Sep 26, 2024
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dweindl added a commit that referenced this issue Sep 30, 2024
@dweindl
Consolidate scripts and python package (#238)
61d4f03 
* some functionality from `scripts/` would be useful inside the library
* some functionality from the library was replicated in `scripts/`

-> consolidate (see also #208), turn separate scripts into entrypoints (currently prefixed with `bmp-` from Benchmark-Models-Petab)

* Reduce number of package configuration files
* replace isort/flake/... by ruff
* Problem feature table accessible through the library (closes #169)
* `--help` for the overview table entrypoint
* Extend overview table: add objective priors (Closes #232
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Consolidate scripts and python package Benchmarking-Initiative/Benchmark-Models-PEtab
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@FFroehlich @dweindl