Update data and metadata names for consistency. See #44.

Starts to transition to pbc data for vignette, but with bugs remaining in derived_variables.Rmd

data-raw/prep_pbc_data.R

@@ -2,10 +2,19 @@
 library(yaml)
 library(readr)
 library(usethis)
+library(survival)
 
-# import the pbc_data.yaml file.
-pbc_data <- read_yaml("inst/extdata/pbc_data.yaml")
-usethis::use_data(pbc_data, overwrite = TRUE)
+# Get PBC data from survival package
+
+data(pbc, package = "survival")
+
+# Save both the original pbc data 
+usethis::use_data(pbc, overwrite = TRUE)
+
+
+# import the pbc_metadata.yaml file.
+pbc_metadata <- read_yaml("inst/extdata/pbc_metadata.yaml")
+usethis::use_data(pbc_metadata, overwrite = TRUE)
 
 # import the pbc_variables.csv file
 pbc_variables <- read_csv("inst/extdata/pbc_variables.csv",
@@ -40,16 +49,19 @@ pbc_variable_details <- read_csv("inst/extdata/pbc_variable_details.csv",
         variable = col_character(),
         dummyVariable = col_character(),
         typeEnd = col_character(),
+        typeStart = col_character(),
         databaseStart = col_character(),
         variableStart = col_character(),
-        typeStart = col_character(),
+        variableStartLabel = col_character(),
+        numValidCat = col_double(),
         recEnd = col_character(),
-        recStart = col_character(),
         catLabel = col_character(),
         catLabelLong = col_character(),
-        numValidCat = col_double(),
-        units = col_logical(),
-        notes = col_logical(),
+        units = col_character(),
+        recStart = col_character(),
+        catLabelLong = col_character(),
+        variableStartShortLabel = col_character(),
+        notes = col_character(),
         .default = col_character()  # for any remaining columns
     )
 )

inst/extdata/pbc.Rd

@@ -14,19 +14,19 @@
   its name to "primary biliary cholangitis" was proposed by patient
   advocacy groups in 2014.
 
-This data is from the Mayo Clinic trial in PBC conducted between 1974
-and 1984.  
-A total of 424 PBC patients, referred to Mayo Clinic during that ten-year
-interval, met eligibility criteria for the randomized placebo controlled
-trial of the drug D-penicillamine.  The first 312 cases in the data set
-participated in the randomized trial and contain largely complete data.  The
-additional 112 cases did not participate in the clinical trial, but consented
-to have basic measurements recorded and to be followed for survival.  Six of
-those cases were lost to follow-up shortly after diagnosis, so the data here
-are on an additional 106 cases as well as the 312 randomized participants.
-
-A nearly identical data set found in appendix D of Fleming and Harrington;
-this version has fewer missing values.
+  This data is from the Mayo Clinic trial in PBC conducted between 1974
+  and 1984.  
+  A total of 424 PBC patients, referred to Mayo Clinic during that ten-year
+  interval, met eligibility criteria for the randomized placebo controlled
+  trial of the drug D-penicillamine.  The first 312 cases in the data set
+  participated in the randomized trial and contain largely complete data.  The
+  additional 112 cases did not participate in the clinical trial, but consented
+  to have basic measurements recorded and to be followed for survival.  Six of
+  those cases were lost to follow-up shortly after diagnosis, so the data here
+  are on an additional 106 cases as well as the 312 randomized participants.
+      
+  A nearly identical data set found in appendix D of Fleming and Harrington;
+  this version has fewer missing values.
 
 }
 \usage{pbc

inst/extdata/pbc_variable_details.csv

@@ -1,69 +1,90 @@
-variable,dummyVariable,typeEnd,databaseStart,variableStart,typeStart,recEnd,recStart,numValidCat,catLabel,catLabelLong,catStartLabel,variableStartShortLabel,variableStartLabel,units,notes
-age,NA,cont,pbc,[age],cont,copy,"[20,80]",NA,NA,NA,NA,age,age,NA,NA
-age,NA,cont,pbc,[age],cont,NA::b,else,NA,missing,missing,NA,age,age,NA,NA
-age,NA,cont,pbc,[age],cont,NA::a,999,NA,not applicable,not applicable,NA,age,age,NA,NA
-albumin,NA,cont,pbc,[albumin],cont,copy,"[1,5]",NA,NA,NA,NA,albumin,albumin,NA,NA
-albumin,NA,cont,pbc,[albumin],cont,NA::b,else,NA,missing,missing,NA,albumin,albumin,NA,NA
-albumin,NA,cont,pbc,[albumin],cont,NA::a,99,NA,not applicable,not applicable,NA,albumin,albumin,NA,NA
-alk.phos,NA,cont,pbc,[alk.phos],cont,copy,"[200,15000]",NA,NA,NA,NA,alk.phos,alk.phos,NA,NA
-alk.phos,NA,cont,pbc,[alk.phos],cont,NA::b,else,NA,missing,missing,NA,alk.phos,alk.phos,NA,NA
-ascites,ascites_cat3_1,cat,pbc,[ascites],cat,0,0,2,ascites 0,ascites 0,ascites 0,ascites,ascites,NA,NA
-ascites,ascites_cat3_2,cat,pbc,[ascites],cat,1,1,2,ascites 1,ascites 1,ascites 1,ascites,ascites,NA,NA
-ascites,ascites_cat3_NA::b,cat,pbc,[ascites],cat,NA::b,else,2,missing,missing,ascites 0,ascites,ascites,NA,NA
-ascites,ascites_cat3_NA::a,cat,pbc,[ascites],cat,NA::a,9,2,not applicable,not applicable,not applicable,NA,ascites,NA,NA
-alk.phos,NA,cont,pbc,[alk.phos],cont,NA::a,99999,NA,not applicable,not applicable,NA,alk.phos,alk.phos,NA,NA
-ast,NA,cont,pbc,[ast],cont,copy,"[20,500]",NA,NA,NA,NA,ast,ast,NA,NA
-ast,NA,cont,pbc,[ast],cont,NA::b,else,NA,missing,missing,NA,ast,ast,NA,NA
-ast,NA,cont,pbc,[ast],cont,NA::a,9999,NA,not applicable,not applicable,NA,ast,ast,NA,NA
-bili,NA,cont,pbc,[bili],cont,copy,"[0,100]",NA,NA,NA,NA,bili,bili,NA,NA
-bili,NA,cont,pbc,[bili],cont,NA::b,else,NA,missing,missing,NA,bili,bili,NA,NA
-chol,NA,cont,pbc,[chol],cont,copy,"[100,2000]",NA,NA,NA,NA,chol,chol,NA,NA
-chol,NA,cont,pbc,[chol],cont,NA::b,else,NA,missing,missing,NA,chol,chol,NA,NA
-chol,NA,cont,pbc,[chol],cont,NA::a,9999,NA,missing,missing,NA,chol,chol,NA,NA
-copper,NA,cont,pbc,[copper],cont,copy,"[0,1000]",NA,NA,NA,NA,copper,copper,NA,NA
-copper,NA,cont,pbc,[copper],cont,NA::b,else,NA,missing,missing,NA,copper,copper,NA,NA
-edema,edema_cat3_1,cat,pbc,[edema],cat,0,0,3,edema 0.0,edema 0.0,edema 0.0,edema,edema,NA,NA
-edema,edema_cat3_2,cat,pbc,[edema],cat,0.5,0.5,3,edema 0.5,edema 0.5,edema 0.5,edema,edema,NA,NA
-edema,edema_cat3_3,cat,pbc,[edema],cat,1,1,3,edema 1.0,edema 1.0,edema 1.0,edema,edema,NA,NA
-edema,edema_cat3_NA::b,cat,pbc,[edema],cat,NA::b,else,3,missing,missing,missing,edema,edema,NA,NA
-edema,edema_cat3_NA::a,cat,pbc,[edema],cat,NA::a,9,3,not applicable,not applicable,not applicable,edema,edema,NA,NA
-hepato,heapto_cat3_1,cat,pbc,[hepato],cat,0,0,2,hepato 0,hepato 0,hepato 0,hepato,hepato,NA,NA
-hepato,heapto_cat3_1,cat,pbc,[hepato],cat,1,1,2,hepato 1,hepato 1,hepato 1,hepato,hepato,NA,NA
-hepato,heapto_cat3_NA::a,cat,pbc,[hepato],cat,NA::b,else,2,missing,missing,missing,hepato,hepato,NA,NA
-copper,NA,cont,pbc,[copper],cont,NA::a,9999,NA,missing,missing,NA,copper,copper,NA,NA
-platelet,NA,cont,pbc,[platelet],cont,copy,"[0,1000]",NA,NA,NA,NA,platelet,platelet,NA,NA
-platelet,NA,cont,pbc,[platelet],cont,NA::b,else,NA,missing,missing,NA,platelet,platelet,NA,NA
-platelet,NA,cont,pbc,[platelet],cont,NA::a,9999,NA,not applicable,not applicable,NA,platelet,platelet,NA,NA
-protime,NA,cont,pbc,[protime],cont,copy,"[5, 30]",NA,NA,NA,NA,protime,protime,NA,NA
-protime,NA,cont,pbc,[protime],cont,NA::b,else,NA,missing,missing,NA,protime,protime,NA,NA
-hepato,heapto_cat3_NA::b,cat,pbc,[hepato],cat,NA::a,9,2,not applicable,not applicable,not applicable,hepato,hepato,NA,NA
-sex,sex_cat2_1,cat,pbc,[sex],cat,m,m,2,sex m,sex m,sex m,sex,sex,NA,NA
-sex,sex_cat2_2,cat,pbc,[sex],cat,f,f,2,sex f,sex f,sex f,sex,sex,NA,NA
-sex,sex_cat2_NA::b,cat,pbc,[sex],cat,NA::b,else,2,missing,missing,sex m,sex,sex,NA,NA
-sex,sex_cat2_NA::a,cat,pbc,[sex],cat,NA::a,9,2,not applicable,not applicable,sex m,sex,sex,NA,NA
-spiders,spiders0,cat,pbc,[spiders],cat,0,0,2,spiders 0,spiders 0,spiders 0,spiders,spiders,NA,NA
-spiders,spiders1,cat,pbc,[spiders],cat,1,1,2,spiders 1,spiders 1,spiders 1,spiders,spiders,NA,NA
-spiders,spiders_NA::b,cat,pbc,[spiders],cat,NA::b,else,2,missing,missing,spiders 0,spiders,spiders,NA,NA
-spiders,spiders_NA::a,cat,pbc,[spiders],cat,NA::a,9,2,not applicable,not applicable,not applicable,spiders,spiders,NA,NA
-stage,stage1,cat,pbc,[stage],cat,1,1,4,stage 1,stage 1,stage 1,stage,stage,NA,NA
-stage,stage2,cat,pbc,[stage],cat,2,2,4,stage 2,stage 2,stage 2,stage,stage,NA,NA
-stage,stage3,cat,pbc,[stage],cat,3,3,4,stage 3,stage 3,stage 3,stage,stage,NA,NA
-stage,stage4,cat,pbc,[stage],cat,4,4,4,stage 4,stage 4,stage 4,stage,stage,NA,NA
-stage,stage_NA::b,cat,pbc,[stage],cat,NA::b,else,4,missing,missing,missing,stage,stage,NA,NA
-stage,stage_NA::a,cat,pbc,[stage],cat,NA::a,9,4,not applicable,not applicable,not applicable,stage,stage,NA,NA
-status,status0,cat,pbc,[status],cat,0,0,3,status 0,status 0,status 0,status,status,NA,NA
-status,status1,cat,pbc,[status],cat,1,1,3,status 1,status 1,status 1,status,status,NA,NA
-status,status2,cat,pbc,[status],cat,2,2,3,status 2,status 2,status 2,status,status,NA,NA
-status,status_NA::b,cat,pbc,[status],cat,NA::b,else,3,missing,missing,status 0,status,status,NA,NA
-protime,NA,cont,pbc,[protime],cont,NA::a,99,NA,not applicable,not applicable,NA,protime,protime,NA,NA
-time,NA,cont,pbc,[time],cont,copy,"[0,5000]",NA,NA,NA,NA,time,time,NA,NA
-time,NA,cont,pbc,[time],cont,NA::b,else,NA,missing,missing,NA,time,time,NA,NA
-time,NA,cont,pbc,[time],cont,NA::a,9999,NA,not applicable,not applicable,NA,time,time,NA,NA
-trig,NA,cont,pbc,[trig],cont,copy,"[0,1000]",NA,NA,NA,NA,trig,trig,NA,NA
-trig,NA,cont,pbc,[trig],cont,NA::b,else,NA,missing,missing,NA,trig,trig,NA,NA
-status,status_NA::a,cat,pbc,[status],cat,NA::a,9,3,not applicable,not applicable,not applicable,status,status,NA,NA
-trt,trt1,cat,pbc,[trt],cat,1,1,2,trt 1,trt 1,trt 1,trt,trt,NA,NA
-trt,trt2,cat,pbc,[trt],cat,2,2,2,trt 2,trt 2,trt 2,trt,trt,NA,NA
-trt,trt_NA::b,cat,pbc,[trt],cat,NA::b,else,2,missing,missing,trt 1,trt,trt,NA,NA
-trt,trt_NA::a,cat,pbc,[trt],cat,NA::a,9,2,not applicable,not applicable,not applicable,trt,trt,NA,NA
-trig,NA,cont,pbc,[trig],cont,NA::a,9999,NA,missing,missing,NA,trig,trig,NA,NA
+variable,dummyVariable,typeEnd,typeStart,databaseStart,variableStart,variableStartLabel,numValidCat,recEnd,catLabel,catLabelLong,units,recStart,catStartLabel,variableStartShortLabel,notes
+age,NA,cont,cont,pbc,[age],age,NA,copy,NA,NA,NA,"[20,80]",NA,age,NA
+age,NA,cont,cont,pbc,[age],age,NA,NA::b,missing,missing,NA,else,NA,age,NA
+age,NA,cont,cont,pbc,[age],age,NA,NA::a,not applicable,not applicable,NA,999,NA,age,NA
+albumin,NA,cont,cont,pbc,[albumin],albumin,NA,copy,NA,NA,NA,"[1,5]",NA,albumin,NA
+albumin,NA,cont,cont,pbc,[albumin],albumin,NA,NA::b,missing,missing,NA,else,NA,albumin,NA
+albumin,NA,cont,cont,pbc,[albumin],albumin,NA,NA::a,not applicable,not applicable,NA,99,NA,albumin,NA
+alk.phos,NA,cont,cont,pbc,[alk.phos],alk.phos,NA,copy,NA,NA,NA,"[200,15000]",NA,alk.phos,NA
+alk.phos,NA,cont,cont,pbc,[alk.phos],alk.phos,NA,NA::b,missing,missing,NA,else,NA,alk.phos,NA
+ascites,ascites_cat3_1,cat,cat,pbc,[ascites],ascites,2,0,ascites 0,ascites 0,NA,0,ascites 0,ascites,NA
+ascites,ascites_cat3_2,cat,cat,pbc,[ascites],ascites,2,1,ascites 1,ascites 1,NA,1,ascites 1,ascites,NA
+ascites,ascites_cat3_NA::b,cat,cat,pbc,[ascites],ascites,2,NA::b,missing,missing,NA,else,ascites 0,ascites,NA
+ascites,ascites_cat3_NA::a,cat,cat,pbc,[ascites],ascites,2,NA::a,not applicable,not applicable,NA,9,not applicable,NA,NA
+alk.phos,NA,cont,cont,pbc,[alk.phos],alk.phos,NA,NA::a,not applicable,not applicable,NA,99999,NA,alk.phos,NA
+ast,NA,cont,cont,pbc,[ast],ast,NA,copy,NA,NA,NA,"[20,500]",NA,ast,NA
+ast,NA,cont,cont,pbc,[ast],ast,NA,NA::b,missing,missing,NA,else,NA,ast,NA
+ast,NA,cont,cont,pbc,[ast],ast,NA,NA::a,not applicable,not applicable,NA,9999,NA,ast,NA
+bili,NA,cont,cont,pbc,[bili],bili,NA,copy,NA,NA,NA,"[0,100]",NA,bili,NA
+bili,NA,cont,cont,pbc,[bili],bili,NA,NA::b,missing,missing,NA,else,NA,bili,NA
+chol,NA,cont,cont,pbc,[chol],chol,NA,copy,NA,NA,NA,"[100,2000]",NA,chol,NA
+chol,NA,cont,cont,pbc,[chol],chol,NA,NA::b,missing,missing,NA,else,NA,chol,NA
+chol,NA,cont,cont,pbc,[chol],chol,NA,NA::a,missing,missing,NA,9999,NA,chol,NA
+copper,NA,cont,cont,pbc,[copper],copper,NA,copy,NA,NA,NA,"[0,1000]",NA,copper,NA
+copper,NA,cont,cont,pbc,[copper],copper,NA,NA::b,missing,missing,NA,else,NA,copper,NA
+edema,edema_cat3_1,cat,cat,pbc,[edema],edema,3,0,edema 0.0,edema 0.0,NA,0,edema 0.0,edema,NA
+edema,edema_cat3_2,cat,cat,pbc,[edema],edema,3,0.5,edema 0.5,edema 0.5,NA,0.5,edema 0.5,edema,NA
+edema,edema_cat3_3,cat,cat,pbc,[edema],edema,3,1,edema 1.0,edema 1.0,NA,1,edema 1.0,edema,NA
+edema,edema_cat3_NA::b,cat,cat,pbc,[edema],edema,3,NA::b,missing,missing,NA,else,missing,edema,NA
+edema,edema_cat3_NA::a,cat,cat,pbc,[edema],edema,3,NA::a,not applicable,not applicable,NA,9,not applicable,edema,NA
+hepato,heapto_cat3_1,cat,cat,pbc,[hepato],hepato,2,0,hepato 0,hepato 0,NA,0,hepato 0,hepato,NA
+hepato,heapto_cat3_1,cat,cat,pbc,[hepato],hepato,2,1,hepato 1,hepato 1,NA,1,hepato 1,hepato,NA
+hepato,heapto_cat3_NA::a,cat,cat,pbc,[hepato],hepato,2,NA::b,missing,missing,NA,else,missing,hepato,NA
+copper,NA,cont,cont,pbc,[copper],copper,NA,NA::a,missing,missing,NA,9999,NA,copper,NA
+platelet,NA,cont,cont,pbc,[platelet],platelet,NA,copy,NA,NA,NA,"[0,1000]",NA,platelet,NA
+platelet,NA,cont,cont,pbc,[platelet],platelet,NA,NA::b,missing,missing,NA,else,NA,platelet,NA
+platelet,NA,cont,cont,pbc,[platelet],platelet,NA,NA::a,not applicable,not applicable,NA,9999,NA,platelet,NA
+protime,NA,cont,cont,pbc,[protime],protime,NA,copy,NA,NA,NA,"[5, 30]",NA,protime,NA
+protime,NA,cont,cont,pbc,[protime],protime,NA,NA::b,missing,missing,NA,else,NA,protime,NA
+hepato,heapto_cat3_NA::b,cat,cat,pbc,[hepato],hepato,2,NA::a,not applicable,not applicable,NA,9,not applicable,hepato,NA
+sex,sex_cat2_1,cat,cat,pbc,[sex],sex,2,m,sex m,sex m,NA,m,sex m,sex,NA
+sex,sex_cat2_2,cat,cat,pbc,[sex],sex,2,f,sex f,sex f,NA,f,sex f,sex,NA
+sex,sex_cat2_NA::b,cat,cat,pbc,[sex],sex,2,NA::b,missing,missing,NA,else,sex m,sex,NA
+sex,sex_cat2_NA::a,cat,cat,pbc,[sex],sex,2,NA::a,not applicable,not applicable,NA,9,sex m,sex,NA
+spiders,spiders0,cat,cat,pbc,[spiders],spiders,2,0,spiders 0,spiders 0,NA,0,spiders 0,spiders,NA
+spiders,spiders1,cat,cat,pbc,[spiders],spiders,2,1,spiders 1,spiders 1,NA,1,spiders 1,spiders,NA
+spiders,spiders_NA::b,cat,cat,pbc,[spiders],spiders,2,NA::b,missing,missing,NA,else,spiders 0,spiders,NA
+spiders,spiders_NA::a,cat,cat,pbc,[spiders],spiders,2,NA::a,not applicable,not applicable,NA,9,not applicable,spiders,NA
+stage,stage1,cat,cat,pbc,[stage],stage,4,1,stage 1,stage 1,NA,1,stage 1,stage,NA
+stage,stage2,cat,cat,pbc,[stage],stage,4,2,stage 2,stage 2,NA,2,stage 2,stage,NA
+stage,stage3,cat,cat,pbc,[stage],stage,4,3,stage 3,stage 3,NA,3,stage 3,stage,NA
+stage,stage4,cat,cat,pbc,[stage],stage,4,4,stage 4,stage 4,NA,4,stage 4,stage,NA
+stage,stage_NA::b,cat,cat,pbc,[stage],stage,4,NA::b,missing,missing,NA,else,missing,stage,NA
+stage,stage_NA::a,cat,cat,pbc,[stage],stage,4,NA::a,not applicable,not applicable,NA,9,not applicable,stage,NA
+status,status0,cat,cat,pbc,[status],status,3,0,status 0,status 0,NA,0,status 0,status,NA
+status,status1,cat,cat,pbc,[status],status,3,1,status 1,status 1,NA,1,status 1,status,NA
+status,status2,cat,cat,pbc,[status],status,3,2,status 2,status 2,NA,2,status 2,status,NA
+status,status_NA::b,cat,cat,pbc,[status],status,3,NA::b,missing,missing,NA,else,status 0,status,NA
+protime,NA,cont,cont,pbc,[protime],protime,NA,NA::a,not applicable,not applicable,NA,99,NA,protime,NA
+time,NA,cont,cont,pbc,[time],time,NA,copy,NA,NA,NA,"[0,5000]",NA,time,NA
+time,NA,cont,cont,pbc,[time],time,NA,NA::b,missing,missing,NA,else,NA,time,NA
+time,NA,cont,cont,pbc,[time],time,NA,NA::a,not applicable,not applicable,NA,9999,NA,time,NA
+trig,NA,cont,cont,pbc,[trig],trig,NA,copy,NA,NA,NA,"[0,1000]",NA,trig,NA
+trig,NA,cont,cont,pbc,[trig],trig,NA,NA::b,missing,missing,NA,else,NA,trig,NA
+status,status_NA::a,cat,cat,pbc,[status],status,3,NA::a,not applicable,not applicable,NA,9,not applicable,status,NA
+trt,trt1,cat,cat,pbc,[trt],trt,2,1,trt 1,trt 1,NA,1,trt 1,trt,NA
+trt,trt2,cat,cat,pbc,[trt],trt,2,2,trt 2,trt 2,NA,2,trt 2,trt,NA
+trt,trt_NA::b,cat,cat,pbc,[trt],trt,2,NA::b,missing,missing,NA,else,trt 1,trt,NA
+trt,trt_NA::a,cat,cat,pbc,[trt],trt,2,NA::a,not applicable,not applicable,NA,9,not applicable,trt,NA
+trig,NA,cont,cont,pbc,[trig],trig,NA,NA::a,missing,missing,NA,9999,NA,trig,NA
+example_der,NA,cont,cont,pbc,"DerivedVar::[chol, bili]",example_der,NA,Func::example_der_fun,N/A,N/A,NA,else,N/A,example_der,A test derived variable
+agegrp12,agegrp12_cat12_1,cat,cat,pbc,age,age,12,1,25-29,25-29,years,"[20,24]",20-24,,
+agegrp12,agegrp12_cat12_2,cat,cat,pbc,age,age,12,2,25-29,25-29,years,"[25,29]",25-29,,
+agegrp12,agegrp12_cat12_3,cat,cat,pbc,age,age,12,3,30-34,30-34,years,"[30,34]",30-34,,
+agegrp12,agegrp12_cat12_4,cat,cat,pbc,age,age,12,4,35-39,35-39,years,"[35,39]",35-39,,
+agegrp12,agegrp12_cat12_5,cat,cat,pbc,age,age,12,5,40-44,40-44,years,"[40,44]",40-44,,
+agegrp12,agegrp12_cat12_6,cat,cat,pbc,age,age,12,6,45-49,45-49,years,"[45,49]",45-49,,
+agegrp12,agegrp12_cat12_7,cat,cat,pbc,age,age,12,7,50-54,50-54,years,"[50,54]",50-54,,
+agegrp12,agegrp12_cat12_8,cat,cat,pbc,age,age,12,8,55-59,55-59,years,"[55,59]",55-59,,
+agegrp12,agegrp12_cat12_9,cat,cat,pbc,age,age,12,9,60-64,60-64,years,"[60,64]",60-64,,
+agegrp12,agegrp12_cat12_10,cat,cat,pbc,age,age,12,10,65-69,65-69,years,"[65,69]",65-69,,
+agegrp12,agegrp12_cat12_11,cat,cat,pbc,age,age,12,11,70-74,70-74,years,"[70,74]",70-74,,
+agegrp12,agegrp12_cat12_12,cat,cat,pbc,age,age,12,12,75-79,75-79,years,"[75,79]",75-79,,
+agegrp12,agegrp12_cat12_NA::B,cat,cat,pbc,age,age,12,NA::b,missing,missing,years,else,else,,
+agegrp6,agegrp6_cat12_1,cat,cat,pbc,age,age,6,1,20-29,20-29,years,"[20,29]",20-29,,
+agegrp6,agegrp6_cat12_2,cat,cat,pbc,age,age,6,2,30-39,30-39,years,[30-39],30-39,,
+agegrp6,agegrp6_cat12_3,cat,cat,pbc,age,age,6,3,40-49,40-49,years,[40-49],40-49,,
+agegrp6,agegrp6_cat12_4,cat,cat,pbc,age,age,6,4,50-59,50-59,years,[50-59],50-59,,
+agegrp6,agegrp6_cat12_5,cat,cat,pbc,age,age,6,5,60-69,60-69,years,[60-69],60-69,,
+agegrp6,agegrp6_cat12_6,cat,cat,pbc,age,age,6,6,70-79,70-79,years,[70-79],70-79,,
+agegrp6,agegrp6_cat12_NA::B,cat,cat,pbc,age,age,6,NA::b,missing,missing,years,else,else,,