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Releases: BigDataBiology/macrel

v1.5.0

23 Sep 11:35
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Add support for local querying of the AMPSphere

Full ChangeLog:

  • Add support for local searching
  • Slightly change output format for AMPSphere matching
  • Add --verbose and --quiet flags

Version 1.4.0

27 Jun 13:46
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Adds query-ampsphere command to query the AMPsphere database (described in Santos-Júnior et al., 2024).

Version 1.2.0

09 May 14:43
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Use pyrodigal instead of a modified version of prodigal.

Version 1.1.0

09 May 13:42
v1.1.0
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  • Add support for bzip2 and xz compressed FASTA files
  • Eliminate R dependency
  • Include more extensive testing
  • New feature computation code (Python implementation) made macrel about 3.5 times faster than before:

Version 1.0.1

04 Oct 12:10
v1.0.1
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Bugfix release. Fixes bug when "peptides" with 2 amino acids are present (it used to crash)

Version 1.0.0

21 Dec 03:51
v1.0.0
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Version 1.0 to coincide with paper publication DOI:10.7717/peerj.10555.

The big user-visible change is adding README.md files to the output directories documenting the output files

Version 0.6.1

28 Oct 14:43
v0.6.1
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Makes atomicwrites into an optional dependency: atomicwrites causes issues, especially on Mac OSX

Version 0.6.0

28 Oct 14:42
v0.6.0
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A series of user-experience improvements:

  • Add --log-append flag
  • Add --log-file argument
  • Add usage example in command line help message
  • Use atomic writing for output to avoid partial results

Version 0.5.0

11 May 09:41
v0.5.0
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User visible changes

  • Fix bug with Prodigal by changing internal parameters. Although this is a bugfix, it will also change the results in some cases.
  • Output table now includes the version on the header

Bugfixes

  • Fix bug with using --force and existing directories

Version 0.4.0

16 Mar 15:11
v0.4.0
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Biggest change is the use of a new feature computation where initial Methionines are removed for robustness.