Version 1.3.78

What's Changed

• Allow AnnotateNovelSites to be run in a mode without a prior VCF by @bbimber in #348
• Minor code cleanup in AnnotateNovelSites by @bbimber in #349

Full Changelog: 1.3.77...1.3.78

Version 1.3.77

What's Changed

• Bump docker/setup-buildx-action from 3.5.0 to 3.6.0 by @dependabot in #338
• Bump docker/setup-buildx-action from 3.6.0 to 3.6.1 by @dependabot in #339
• Bump docker/build-push-action from 6.5.0 to 6.6.1 by @dependabot in #341
• Bump docker/build-push-action from 6.6.1 to 6.7.0 by @dependabot in #342
• Bump docker/build-push-action from 6.7.0 to 6.8.0 by @dependabot in #343
• Bump docker/build-push-action from 6.8.0 to 6.9.0 by @dependabot in #344
• Bump docker/setup-buildx-action from 3.6.1 to 3.7.0 by @dependabot in #345
• Bump docker/setup-buildx-action from 3.7.0 to 3.7.1 by @dependabot in #346
• Improvements to GenotypeConcordance annotation by @bbimber in #347

Full Changelog: 1.3.76...1.3.77

Version 1.3.76

What's Changed

• Ensure VariantContexts are sorted in MergeVcfsAndGenotypes by @bbimber in #337

Full Changelog: 1.3.75...1.3.76

Version 1.3.75

What's Changed

• Bump docker/build-push-action from 6.0.1 to 6.4.0 by @dependabot in #330
• Bump docker/setup-buildx-action from 3.3.0 to 3.4.0 by @dependabot in #329
• Bump docker/setup-qemu-action from 3.0.0 to 3.1.0 by @dependabot in #327
• Bump docker/build-push-action from 6.4.0 to 6.4.1 by @dependabot in #331
• Bump docker/setup-buildx-action from 3.4.0 to 3.5.0 by @dependabot in #332
• Bump docker/build-push-action from 6.4.1 to 6.5.0 by @dependabot in #333
• Bump docker/setup-qemu-action from 3.1.0 to 3.2.0 by @dependabot in #334
• Bump docker/login-action from 3.2.0 to 3.3.0 by @dependabot in #335
• Ensure VariantContexts are sorted in ExtendedMultiVariantWalkerGrouped by @bbimber in #336

Full Changelog: 1.3.74...1.3.75

Version 1.3.74

What's Changed

• Add tool to identify loci with high fraction of clipped reads by @bbimber in #318
• Bump docker/build-push-action from 5.3.0 to 6.0.0 by @dependabot in #322
• Bump docker/login-action from 3.1.0 to 3.2.0 by @dependabot in #319
• Switch genomic position calc to 64 bit long by @hextraza in #321
• Bump docker/build-push-action from 6.0.0 to 6.0.1 by @dependabot in #323

Full Changelog: 1.3.73...1.3.74

Version 1.3.73

What's Changed

• add _sort to DocValues by @hextraza in #317

Full Changelog: 1.3.72...1.3.73

Version 1.3.72

What's Changed

• Bump peaceiris/actions-gh-pages from 3.9.3 to 4.0.0 by @dependabot in #314
• Bump docker/setup-buildx-action from 3.2.0 to 3.3.0 by @dependabot in #315
• Update lucene version by @bbimber in #316

Full Changelog: 1.3.71...1.3.72

Version 1.3.71

What's Changed

• Add sort fields every time we doc.add a value by @bbimber in #305

Full Changelog: 1.3.70...1.3.71

Version 1.3.70

What's Changed

• Bump docker/setup-buildx-action from 3.0.0 to 3.1.0 by @dependabot in #307
• Bump docker/build-push-action from 5.1.0 to 5.2.0 by @dependabot in #308
• Bump softprops/action-gh-release from 1 to 2 by @dependabot in #309
• Bump docker/login-action from 3.0.0 to 3.1.0 by @dependabot in #310
• Bump docker/build-push-action from 5.2.0 to 5.3.0 by @dependabot in #312
• Bump docker/setup-buildx-action from 3.1.0 to 3.2.0 by @dependabot in #311

Full Changelog: 1.3.69...1.3.70

Version 1.3.69

What's Changed

• Update to GATK 4.5.0 by @bbimber in #306

Full Changelog: 1.3.68...1.3.69