Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Create a "mulled biocontainers" to bio.tools metadata sync #13

Open
hmenager opened this issue Jan 10, 2024 · 2 comments
Open

Create a "mulled biocontainers" to bio.tools metadata sync #13

hmenager opened this issue Jan 10, 2024 · 2 comments

Comments

@hmenager
Copy link

The current CI process only sends metadata about containers generated from Dockerfiles. We would need to do the same for all containers generated with mulled, so that the research-software-ecosystem/content repository has a file for each available mulled biocontainers as well.
Happy to take any suggestion on this.
@hmenager
Copy link
Author

Would probably adopt the same strategy and results as the one suggested for dockerfile biocontainers in #12

@hmenager
Copy link
Author

from discussion with @bgruening this morning:

The build system for Bioconda takes recipes and converts them into conda packages that are uploaded to anaconda.org as well as Docker containers that are uploaded to quay.io as part of the Biocontainers project.

https://bioconda.github.io/contributor/build-system.html

What this measns is that we can assume safely that there are bioconda-based docker and singularity containers for each bioconda package

hmenager added a commit to research-software-ecosystem/content that referenced this issue Jan 17, 2024
@hmenager
remove biocontainers metadata retrieved from obsolete repo
dcce478 
Current files in the form *.biocontainers.yaml come from a parrallel
repository, https://github.com/BioContainers/tools-metadata/, which
hasn't been updated for the last three years. Removing this.
biocontainers sync will be revisited (see
BioContainers/ci#12 and
BioContainers/ci#13).
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@hmenager