Replace genreflex in favor of rootcling #2941
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| name: Ubuntu CI | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Set python openssl package | |
| run: | | |
| if [ "${{ env.OSVERS }}" = "ubuntu-20.04" ]; then | |
| echo "PYOPENSSL=python-openssl" >> $GITHUB_ENV | |
| fi | |
| if [ "${{ env.OSVERS }}" = "ubuntu-22.04" ]; then | |
| echo "PYOPENSSL=python3-openssl" >> $GITHUB_ENV | |
| fi | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libopenmpi-dev libomp5 libomp-dev libnuma-dev freeglut3-dev \ | |
| libreadline-dev libsqlite3-dev tk-dev ${{ env.PYOPENSSL }} ninja-build libblas-dev liblapack-dev libgit2-dev | |
| curl -L -O https://github.com/Kitware/CMake/releases/download/v3.19.3/cmake-3.19.3-Linux-x86_64.sh | |
| chmod +x cmake-3.19.3-Linux-x86_64.sh | |
| sudo ./cmake-3.19.3-Linux-x86_64.sh --skip-license --prefix=/usr/local | |
| - name: Start Xvfb | |
| run: | | |
| set -e | |
| sudo apt-get -y install xvfb | |
| XVFBARGS=":99 -ac -screen 0 2560x1440x24" | |
| /usr/bin/Xvfb $XVFBARGS >> /tmp/Xvfb.out 2>&1 & | |
| disown -ar | |
| sleep 3 | |
| - name: Set OSVERS | |
| run: | | |
| ID=$(grep -oP '(?<=^ID=).+' /etc/os-release | tr -d '"') | |
| VERSION=$(grep -oP '(?<=^VERSION_ID=).+' /etc/os-release | tr -d '"') | |
| echo "OSVERS=$ID-$VERSION" >> $GITHUB_ENV | |
| - name: Cache pyenv | |
| uses: actions/cache@v4 | |
| id: pyenv-cache | |
| with: | |
| path: ~/.pyenv | |
| key: ${{ env.OSVERS }}-pyenv-3.9.1 | |
| - name: Install pyenv dependency | |
| if: steps.pyenv-cache.outputs.cache-hit != 'true' | |
| run: | | |
| if [ ! -f "$HOME/.pyenv/bin/pyenv" ]; then | |
| curl https://pyenv.run | bash | |
| fi | |
| export PATH="$HOME/.pyenv/bin:$PATH" | |
| eval "$(pyenv init --path)" | |
| eval "$(pyenv init -)" | |
| PYTHON_CONFIGURE_OPTS="--enable-shared" pyenv install 3.9.1 | |
| pyenv shell 3.9.1 | |
| - name: Checkout BioDynaMo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Cache Third Party Packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: build/third_party | |
| key: ${{ env.OSVERS }}-third-party-${{ hashFiles('cmake/external/SHA256Digests.cmake') }} | |
| - name: Build BioDynaMo | |
| shell: bash | |
| run: | | |
| export PATH="$HOME/.pyenv/bin:$PATH" | |
| eval "$(pyenv init --path)" | |
| eval "$(pyenv init -)" | |
| pyenv shell 3.9.1 | |
| cmake -G Ninja \ | |
| -Dparaview=ON \ | |
| -Dbenchmark=ON \ | |
| -Dlibgit2=ON \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -B build | |
| cmake --build build --parallel --config Release | |
| - name: Unit tests BioDynaMo | |
| shell: bash | |
| working-directory: build | |
| run: | | |
| . bin/thisbdm.sh | |
| bdm config | |
| export DISPLAY=:99.0 | |
| ninja run-unit-tests | |
| - name: Style guide checks | |
| shell: bash | |
| run: | | |
| export PATH="$HOME/.pyenv/bin:$PATH" | |
| eval "$(pyenv init --path)" | |
| eval "$(pyenv init -)" | |
| pyenv shell 3.9.1 | |
| wget https://apt.llvm.org/llvm-snapshot.gpg.key | |
| sudo apt-key add llvm-snapshot.gpg.key | |
| sudo add-apt-repository "deb http://apt.llvm.org/focal/ llvm-toolchain-focal-10 main" | |
| sudo apt update | |
| sudo apt install -y cloc clang-tidy clang-format | |
| cloc --exclude-dir=build . | |
| cmake -B build | |
| cd build | |
| cmake --build . --target fetch-master | |
| cmake --build . --target gtest || true | |
| cmake --build . --target show-format || true | |
| cmake --build . --target show-tidy || true | |
| cmake --build . --target check-cpplint || true | |
| if: github.event_name == 'pull_request' && matrix.os == 'ubuntu-20.04' |