Create BioDynaMo singularity image #244
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It will be important in future to ensure that the singularit build file does not cause conflicts with BioDynaMo on HPCs or become reduntant. Thus, creating a new branch for testing singularity at each up-date to master will ensure no errors occur.
Moved definition file so it can be used in github worflow tests more easily.
Adding an initial test file for a Singularity continuous test into the biodynamo workflow. Currently the first test will just build an image based on the deifnition file.
Updating file to includes changes to the overall singularity file. Inlcudes adding non-interactive to prevent asking for user input.
Adding ninja to the installed apps so that biodynamo will build with all available threads. More flexible and generalisable.
Seems there is an issue with the CentOS info file as it thinks it is in a container.
Seems singularity version 3.8.5 was removed so updating to 3.9
Adding singularity documentation for the website.
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I believe this branch is ready to be merged into master and have its trello section moved to completed. In summary this branch includes: |
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Accidentally closed the previous pull request. I believe this branch is ready to be merged into master and have its trello section moved to completed.
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Repushing as it seems test called flocking failed. Singularity shouldnt be effecting this test so could be in error. |
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Repushing as it seems test called flocking failed. Singularity shouldnt be effecting this test so could be in error. |
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Kudos, SonarCloud Quality Gate passed!
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LukasBreitwieser
changed the title
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Added singularity files for BioDynaMo. This includes:
Ultimatley this will provide users with the ability to export BioDynaMo to HPCs using Singularity as a container programme.