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BioPhys-Turin · Jan 22, 2024 · bd81cf8 · bd81cf8
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diff --git a/README.md b/README.md
@@ -87,6 +87,13 @@ If a *graph.xml.gz* file is found in the current dir the analysis will be perfor
 python3 tests/run_tests.py
 ```
 
+# Caveats
+
+Please check this stuff in your data:
+- there should be no zero-degree nodes (all nodes should have at least one link)
+- there shouldn't be any duplicate node
+- The `make_form_BoW_df` function discretises the data
+
 # Documentation
 
 [Docs](https://fvalle1.github.io/nsbm/)

diff --git a/docs/_images/network.png b/docs/_images/network.png
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -1,20 +1,22 @@
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html5" lang="en" data-content_root="../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Overview: module code &mdash; trisbm 0.5.1 documentation</title>
-      <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
+
+
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-        <script src="../_static/jquery.js"></script>
-        <script src="../_static/underscore.js"></script>
-        <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
-        <script src="../_static/doctools.js"></script>
+        <script src="../_static/jquery.js?v=5d32c60e"></script>
+        <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+        <script src="../_static/documentation_options.js?v=b9afe91b"></script>
+        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" /> 
@@ -25,11 +27,15 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="../index.html" class="icon icon-home"> trisbm
+
+
+
+          <a href="../index.html" class="icon icon-home">
+            trisbm
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
     <input type="hidden" name="check_keywords" value="yes" />
     <input type="hidden" name="area" value="default" />
   </form>
@@ -67,8 +73,8 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home"></a> &raquo;</li>
-      <li>Overview: module code</li>
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Overview: module code</li>
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>

diff --git a/docs/_modules/trisbm/sbmtm.html b/docs/_modules/trisbm/sbmtm.html
diff --git a/docs/_modules/trisbm/trisbm.html b/docs/_modules/trisbm/trisbm.html
diff --git a/docs/_static/_sphinx_javascript_frameworks_compat.js b/docs/_static/_sphinx_javascript_frameworks_compat.js
@@ -1,20 +1,9 @@
-/*
- * _sphinx_javascript_frameworks_compat.js
- * ~~~~~~~~~~
- *
- * Compatability shim for jQuery and underscores.js.
- *
- * WILL BE REMOVED IN Sphinx 6.0
- * xref RemovedInSphinx60Warning
+/* Compatability shim for jQuery and underscores.js.
  *
+ * Copyright Sphinx contributors
+ * Released under the two clause BSD licence
  */
 
-/**
- * select a different prefix for underscore
- */
-$u = _.noConflict();
-
-
 /**
  * small helper function to urldecode strings
  *

diff --git a/docs/_static/basic.css b/docs/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -237,14 +237,8 @@ a.headerlink {
     visibility: hidden;
 }
 
-a.brackets:before,
-span.brackets > a:before{
-    content: "[";
-}
-
-a.brackets:after,
-span.brackets > a:after {
-    content: "]";
+a:visited {
+    color: #551A8B;
 }
 
 h1:hover > a.headerlink,
@@ -335,13 +329,17 @@ p.sidebar-title {
     font-weight: bold;
 }
 
-div.admonition, div.topic, aside.topic, blockquote {
+nav.contents,
+aside.topic,
+div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
 
-div.topic, aside.topic {
+nav.contents,
+aside.topic,
+div.topic {
     border: 1px solid #ccc;
     padding: 7px;
     margin: 10px 0 10px 0;
@@ -379,16 +377,18 @@ div.body p.centered {
 
 div.sidebar > :last-child,
 aside.sidebar > :last-child,
-div.topic > :last-child,
+nav.contents > :last-child,
 aside.topic > :last-child,
+div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
 }
 
 div.sidebar::after,
 aside.sidebar::after,
-div.topic::after,
+nav.contents::after,
 aside.topic::after,
+div.topic::after,
 div.admonition::after,
 blockquote::after {
     display: block;
@@ -613,25 +613,6 @@ ul.simple p {
     margin-bottom: 0;
 }
 
-/* Docutils 0.17 and older (footnotes & citations) */
-dl.footnote > dt,
-dl.citation > dt {
-    float: left;
-    margin-right: 0.5em;
-}
-
-dl.footnote > dd,
-dl.citation > dd {
-    margin-bottom: 0em;
-}
-
-dl.footnote > dd:after,
-dl.citation > dd:after {
-    content: "";
-    clear: both;
-}
-
-/* Docutils 0.18+ (footnotes & citations) */
 aside.footnote > span,
 div.citation > span {
     float: left;
@@ -656,8 +637,6 @@ div.citation > p:last-of-type:after {
     clear: both;
 }
 
-/* Footnotes & citations ends */
-
 dl.field-list {
     display: grid;
     grid-template-columns: fit-content(30%) auto;
@@ -670,10 +649,6 @@ dl.field-list > dt {
     padding-right: 5px;
 }
 
-dl.field-list > dt:after {
-    content: ":";
-}
-
 dl.field-list > dd {
     padding-left: 0.5em;
     margin-top: 0em;
@@ -699,6 +674,16 @@ dd {
     margin-left: 30px;
 }
 
+.sig dd {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+.sig dl {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
 dl > dd:last-child,
 dl > dd:last-child > :last-child {
     margin-bottom: 0;
@@ -767,6 +752,14 @@ abbr, acronym {
     cursor: help;
 }
 
+.translated {
+    background-color: rgba(207, 255, 207, 0.2)
+}
+
+.untranslated {
+    background-color: rgba(255, 207, 207, 0.2)
+}
+
 /* -- code displays --------------------------------------------------------- */
 
 pre {

diff --git a/docs/_static/css/badge_only.css b/docs/_static/css/badge_only.css