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Explain uv and napari-aicsimageio
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multimeric committed Oct 18, 2024
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Expand Up @@ -15,6 +15,20 @@ To install the Napari plugin:
pip install napari-lattice
```

## Faster Installation using `uv`

Installing both `lls-core` and `napari-lattice` takes about 10 minutes using a fast internet connection.
If your connection is slow, or you just don't want to wait this long, you can install it in about 10 seconds using `uv`:

1. Install `uv` following [the instructions here](https://docs.astral.sh/uv/getting-started/installation/)
2. Create a new project using `uv init my-project`
3. `uv add lls-core napari-lattice`

## Recommended Plugins

If you are working with `.czi` files, it is recommended that you install the [`napari-aicsimageio`](https://github.com/AllenCellModeling/napari-aicsimageio) plugin for Napari.
`napari-lattice` does not depend on this plugin, so you will have to install it separately, either using the Napari plugin manager, or using `pip install napari-aicsimageio`.

## CUDA Deconvolution

If you have access to a CUDA-compatible GPU, you can enable deconvolution using `pycudadecon`.
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