Install docs

docs/installation.md

@@ -1,46 +1,39 @@
 # Installation
 
-It is advisable but not required that you install Napari Lattice packages inside a conda environment.
-This is because conda makes it much easier to install system complex dependencies.
+## Recommended Installation
 
-To install the core package, which includes the Python library and command line interface:
+First, create a new conda environment:
 
 ```bash
-pip install lls-core
+conda create -n napari-lattice -c conda-forge 'python==3.11.*' uv pycudadecon
 ```
 
-To install the Napari plugin:
+!!! info
 
-```bash
-pip install napari-lattice
-```
-
-## CUDA Deconvolution
+    We include `pycudadecon` to enable GPU accelerated deconvolution.
 
-If you have access to a CUDA-compatible GPU, you can enable deconvolution using `pycudadecon`.
-
-If you're using conda (or micromamba etc), you can run the following:
+Activate that environment:
 
 ```bash
-conda install -c conda-forge pycudadecon
+conda activate napari-lattice
 ```
 
-Otherwise, you will have to manually ensure the systems dependencies are installed, and then:
+Then use `uv` to quickly install the Napari Lattice suite:
 
 ```bash
-pip install lls-core[deconvolution]
+uv pip install lls-core napari-lattice napari-aicsimageio pyqt5
 ```
 
-## Development Versions
+!!! info
 
-To install the development version of `lls-core`:
+    `napari-aicsimageio` isn't a dependency of the Lattice suite, but is required for loading the `.czi` files generated by the Lightsheet
 
-```bash
-pip install git+https://github.com/BioimageAnalysisCoreWEHI/napari_lattice.git#subdirectory=core
-```
+## Development Installation
 
-For `napari-lattice`:
+To install the development version of `lls-core`, create the `napari-lattice` environment as above, but instead of installing from pip in the last step:
 
 ```bash
-pip install git+https://github.com/BioimageAnalysisCoreWEHI/napari_lattice.git#subdirectory=plugin
+git clone https://github.com/BioimageAnalysisCoreWEHI/napari_lattice.git
+cd napari_lattice
+uv pip install -e core -e plugin napari-aicsimageio pyqt5
 ```

mkdocs.yml

@@ -5,6 +5,16 @@ markdown_extensions:
 - pymdownx.highlight:
     anchor_linenums: true
 - pymdownx.superfences 
+- admonition
+- pymdownx.details
+
+nav:
+- index.md
+- installation.md
+- cli.md
+- api.md
+- workflow.md
+- development.md
 
 plugins:
 - search