feat: Include or exclude patches by their index in relation to suppli…

…ed patch bundles

docs/1_usage.md

@@ -87,10 +87,25 @@ ReVanced CLI is divided into the following fundamental commands:
     > adb install app.apk
     > ```
 
+    > [!NOTE]  
+    > You can use the option `--ii` to include or `--ie` to exclude
+    > patches by their index in relation to supplied patch bundles,
+    > similarly to the option `--include` and `--exclude`.
+    > 
+    > This is useful in case two patches have the same name, and you need to include or exclude one of them.  
+    > The index of a patch is calculated by the position of the patch in the list of patches
+    > from patch bundles supplied using the option `--patch-bundle`.
+    > 
+    > You can list all patches with their indices using the command `list-patches`.
+    > 
+    > Keep in mind, that the indices can change based on the order of the patch bundles supplied,
+    > as well if the patch bundles are updated, because patches can be added or removed.
+
     ```bash
     java -jar revanced-cli.jar patch \
      --patch-bundle revanced-patches.jar \
      --include "Some patch" \
+     --ii 123 \
      --exclude "Some other patch" \
      --out patched-app.apk \
      --device-serial <device-serial> \

src/main/kotlin/app/revanced/cli/command/ListPatchesCommand.kt

@@ -49,6 +49,13 @@ internal object ListPatchesCommand : Runnable {
     )
     private var withUniversalPatches: Boolean = true
 
+    @Option(
+        names = ["-i", "--index"],
+        description = ["List the index of of each patch in relation to the supplied patch bundles."],
+        showDefaultValue = ALWAYS
+    )
+    private var withIndex: Boolean = true
+
     @Option(
         names = ["-f", "--filter-package-name"], description = ["Filter patches by package name."]
     )
@@ -77,34 +84,39 @@ internal object ListPatchesCommand : Runnable {
             }
         }
 
-        fun Patch<*>.buildString() = buildString {
-            append("Name: $name")
-
-            if (withDescriptions) append("\nDescription: $description")
-
-            if (withOptions && options.isNotEmpty()) {
-                appendLine("\nOptions:")
-                append(
-                    options.values.joinToString("\n\n") { option ->
-                        option.buildString()
-                    }.prependIndent("\t")
-                )
-            }
-
-            if (withPackages && compatiblePackages != null) {
-                appendLine("\nCompatible packages:")
-                append(
-                    compatiblePackages!!.joinToString("\n") { it.buildString() }.prependIndent("\t")
-                )
+        fun IndexedValue<Patch<*>>.buildString() = let { (index, patch) ->
+            buildString {
+                if (withIndex) appendLine("Index: $index")
+
+                append("Name: ${patch.name}")
+
+                if (withDescriptions) append("\nDescription: ${patch.description}")
+
+                if (withOptions && patch.options.isNotEmpty()) {
+                    appendLine("\nOptions:")
+                    append(
+                        patch.options.values.joinToString("\n\n") { option ->
+                            option.buildString()
+                        }.prependIndent("\t")
+                    )
+                }
+
+                if (withPackages && patch.compatiblePackages != null) {
+                    appendLine("\nCompatible packages:")
+                    append(patch.compatiblePackages!!.joinToString("\n") {
+                        it.buildString()
+                    }.prependIndent("\t"))
+                }
             }
         }
 
         fun Patch<*>.filterCompatiblePackages(name: String) = compatiblePackages?.any { it.name == name }
             ?: withUniversalPatches
 
-        val patches = PatchBundleLoader.Jar(*patchBundles)
+        val patches = PatchBundleLoader.Jar(*patchBundles).withIndex().toList()
 
-        val filtered = packageName?.let { patches.filter { patch -> patch.filterCompatiblePackages(it) } } ?: patches
+        val filtered =
+            packageName?.let { patches.filter { (_, patch) -> patch.filterCompatiblePackages(it) } } ?: patches
 
         if (filtered.isNotEmpty()) logger.info(filtered.joinToString("\n\n") { it.buildString() })
     }

src/main/kotlin/app/revanced/cli/command/PatchCommand.kt

@@ -39,11 +39,23 @@ internal object PatchCommand : Runnable {
     )
     private var includedPatches = arrayOf<String>()
 
+    @CommandLine.Option(
+        names = ["--ii"],
+        description = ["List of patches to include by their index in relation to the supplied patch bundles."]
+    )
+    private var includedPatchesByIndex = arrayOf<Int>()
+
     @CommandLine.Option(
         names = ["-e", "--exclude"], description = ["List of patches to exclude."]
     )
     private var excludedPatches = arrayOf<String>()
 
+    @CommandLine.Option(
+        names = ["--ei"],
+        description = ["List of patches to exclude by their index in relation to the supplied patch bundles."]
+    )
+    private var excludedPatchesByIndex = arrayOf<Int>()
+
     @CommandLine.Option(
         names = ["--options"], description = ["Path to patch options JSON file."], showDefaultValue = ALWAYS
     )
@@ -283,10 +295,10 @@ internal object PatchCommand : Runnable {
         val packageName = context.packageMetadata.packageName
         val packageVersion = context.packageMetadata.packageVersion
 
-        patches.forEach patch@{ patch ->
+        patches.withIndex().forEach patch@{ (i, patch) ->
             val patchName = patch.name!!
 
-            val explicitlyExcluded = excludedPatches.contains(patchName)
+            val explicitlyExcluded = excludedPatches.contains(patchName) || excludedPatchesByIndex.contains(i)
             if (explicitlyExcluded) return@patch logger.info("Excluding $patchName")
 
             // Make sure the patch is compatible with the supplied APK files package name and version.
@@ -314,7 +326,7 @@ internal object PatchCommand : Runnable {
             // If the patch is implicitly used, it will be only included if [exclusive] is false.
             val implicitlyIncluded = !exclusive && patch.use
             // If the patch is explicitly used, it will be included even if [exclusive] is false.
-            val explicitlyIncluded = includedPatches.contains(patchName)
+            val explicitlyIncluded = includedPatches.contains(patchName) || includedPatchesByIndex.contains(i)
 
             val included = implicitlyIncluded || explicitlyIncluded
             if (!included) return@patch logger.info("$patchName excluded") // Case 1.