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Update example data #179

Update example data

Update example data #179

name: build-checks-release
on:
push:
branches: [ devel ]
pull_request:
branches:
- devel
jobs:
R-CMD-check:
runs-on: ubuntu-latest
container: rocker/r-ver:4.3
steps:
- uses: actions/checkout@v2
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}
- name: Install system requirements
run: |
apt-get update
apt-get install -y --no-install-recommends apt-utils
apt-get install -y --no-install-recommends zlib1g-dev libfftw3-dev libxml2-dev libxt-dev curl libglpk-dev libcairo2-dev libmagick++-dev libcurl4-gnutls-dev libudunits2-dev libproj-dev pandoc pandoc-citeproc libgdal-dev libnode-dev
apt-get clean
rm -rf /var/lib/apt/ilists/*
- name: Install dependencies
run: |
install.packages("BiocManager")
remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories(), Ncpu = 2L)
shell: Rscript {0}
- name: Check
run: |
install.packages("rcmdcheck")
rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")
shell: Rscript {0}
- name: BiocCheck
run: |
BiocManager::install("BiocCheck")
BiocCheck::BiocCheck(".")
shell: Rscript {0}
- name: Test coverage
run: |
remotes::install_cran(c("covr"))
covr::codecov()
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}