... a portal to our collection of Apptainer/Singularity definition and image files.
Usage assumes that you have Apptainer/Singularity installed on your system. Check whether there is package built for your system and install with a package manager. Otherwise, follow the instructions to install Singularity from source code.
We are a computational genomics group and support containers for software in this realm. Typically, the containers bundle multiple packages of diverse programs that are frequently used in combination in a project. In our own work, we seek to bundle everything that should be referenced in the methods description of our scientific papers, thus ensuring complete technical reproducibility of the computational work. For a list of all available containers see CATALOG.
Typical usage is illustrated below: setting up a workdir, acquiring the desired image file, defining an alias to execute commands, and testing the setup:
mkdir workdir
cd workdir
wget https://brendelgroup.org/SingularityHub/SNPat.sif
alias rws='singularity exec -e -B ${PWD} ${PWD}/SNPat.sif'
rws ls /opt
rws biscuit
Please direct all comments and suggestions to Volker Brendel at Indiana University.