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GeneMark key doesn't copy correctly. #32

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standage opened this issue Feb 29, 2016 · 1 comment
Open

GeneMark key doesn't copy correctly. #32

standage opened this issue Feb 29, 2016 · 1 comment

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@standage
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I get this message when trying to install GeneMark key.

failed to copy /xGDBvm/input/xgdbvm//keys/gm_key to /usr/local/src/GENEMARK/genemark_hmm_euk.linux_64/.gm_key...

I don't know if this is a known issue.
@standage
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It looks like the code is programmed to recognize gm_key or .gm_key as a valid key file, but it strips the leading period when storing the $gm_key_core variable, so it really only works for gm_key. We should either change the code so that it doesn't recognize .gm_key, or fix it so that it correctly handles .gm_key.

jduvick added a commit to jduvick/xGDBvm that referenced this issue Mar 2, 2016
@jduvick
Updates to key_exec.php to address github issue:GeneMark key doesn't …
9f557f0 
…copy correctly BrendelGroup#32. Now code handles either .gm_key or gm_key in /iplant/home/[username]/keys/
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@standage